Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01222 ATGGGTTCTGATCCCTCCATAAATACCCTATTGTATTCCTATCCCTTGTTCCTCTCACTTCATTCATTCACTCCTAACACACTTCCCCTCTACCTCCTCCCCACACCACTCTTTTCATCATTTCTTGCCTCTTTTCCAACTTTCCAAACCCCCCCCTTCCTCTCTTTTTGTCCCCCTATACTTGAGAGAGAGATAGGAAAAAAAACACCAAACTTAGCAAAAACAATAATGCCAACACCAACACCAACATCAAGGGCAGCGTTTGGTGGTGTAGAAACTCCTAATGGAGACTCTTCTAACACCAATCCTAATCCCAAACACACCCCTCAAGAATCGCGTGACCTCTCACCTTTTTTGTCTTGTTCTTACCCCATCACTCTTAAGTTCATGGACGTGGCATACCAATTGAAGTTAGAGGACAAACAAAAAAGCGGAGGCAGCATCAAGAGGTTTTTCACGCCGCACGAATCATCACCGTCAAATCAAGGATCAAGGGCGGGAGCGCCGCAGGAGCGAACTATTTTAAAAGGAGTAACGGGAATAGCACACCCGGGGGAGATCTTAGCGGTGCTGGGCCCATCAGGGAGCGGAAAATCAACGCTCCTTAACGCGCTCGCAGGGAGGCTCCATGGACACGGCCTCACCGGAACAATCCTCGCGAACTCGAGCAAACTCACCAAACCGGTTCTCCGGCGAACCGGTTTCGTTACACAGGACGACATCCTCTACCCTCACCTCACGGTTCGCGAGACGCTCGTGTTCTGCGCCATGCTGCGGCTCCCGCGCGCGCTGCCGCGAGCGGCTAAAGTCGCGGCGGCGGAGGCGGCGATCGCGGAGCTAGGGCTGGGGAAGTGCGAGAACACGATAATCGGAAACAGCTTCATCCGCGGCGTCTCCGGCGGGGAGAGGAAGCGCGTGAGCATCGCGCACGAGATGCTGGTGGACCCTTCCCTCCTCATACTGGACGAGCCTACCTCCGGTTTGGACTCCACGGCGGCGCACCGCCTCGTCGTCACGCTCGGTTCCCTCGCGAAGAAGGGCAAAACGGTAATTACCTCGTTGCACCAACCTTCGAGCCGCGTCTACCAGATGTTCGATAAAGTTCTCGTGCTATCGGAAGGACAGTGTTTGTACTTCGGCAAAGGAAGCGACGCCATGCGGTACTTTCAGTCGGTTGGGTTCGCGCCGTCTTTTCCGATGAATCCGGCGGATTTTCTGCTCGATCTCGCCAACGGTGTTTGCCATGTGGATGGTCAAAGCGAAAAAGATAGACCAAACATAAAGCAAAGGCTAATCCATTCATACAACACAGTACTGGGTCCCAAGGTTAAAGCTGCCTGCATGGACACTGCTAATGTTCCTACAAAAAACACACAGCCTTTGAGAAGCAGCTCTTCGAAAGAACGTAGACGTAGCGACAGGGTTAGCTTCTTAGATTGGTTTTACCAATTCAGTATTCTGCTCCAGAGAAGCCTCAAAGAAAGAAAACACGAATCCTTCAACACTCTGAGAGTCTGTCAAGTTATTGCTGCAGCACTATTAGCTGGTTTAATGTGGTGGCACTCAGACTACAGGAACATTCAAGATAGGCTTGGCCTACTCTTCTTCATTTCCATCTTTTGGGGAGTCTTCCCTTCTTTCAACTCGGTTTTTGCATTCCCTCAAGAACGTGCCATCTTCATGAAAGAGAGAGCTTCCGGTATGTACACATTGTCCTCCTATTTCATGGCTCGAATTGTTGGAGACCTGCCAATGGAGCTTATTCTTCCCACGATTTTCCTCATTGTGACATATTGGATGGGTGGACTAAAGCCTGATTTGTGGGCTTTTCTCTTGACTTTGTTGGTTGTGCTTGGATATGTGATGGTGTCACAGGGTCTTGGCCTTGCTTTAGGTGCTGCAATAATGGATGCCAAACAGGCTTCCACAGTGGCAGCAGTGACAATGCTAGCTTTTGTGTTGACAGGTGGATACTATGTCCATAAGGTACCATCTTGCATGGCTTGGATCAAATATATATCCACAACCTTCTACTGTTATAGGCTGCTGACCAGAATCCAGTATGAGGATGGCAAGAAGATATCATATCTATTGGGTTGCTATCATGGTGATAAGGGTGGCTGCAGGTTTGTTGAAGAAGATGTGGTGGGTCAAATTGGCACTCTGGGATGCATTGGGGTGTTGCTTTTCATGTTTGTGTTCTACAGAATATTGGCCTACCTTGCCTTGAGGCGCATCAAGAGTTGA 2247 0.4976 MGSDPSINTLLYSYPLFLSLHSFTPNTLPLYLLPTPLFSSFLASFPTFQTPPFLSFCPPILEREIGKKTPNLAKTIMPTPTPTSRAAFGGVETPNGDSSNTNPNPKHTPQESRDLSPFLSCSYPITLKFMDVAYQLKLEDKQKSGGSIKRFFTPHESSPSNQGSRAGAPQERTILKGVTGIAHPGEILAVLGPSGSGKSTLLNALAGRLHGHGLTGTILANSSKLTKPVLRRTGFVTQDDILYPHLTVRETLVFCAMLRLPRALPRAAKVAAAEAAIAELGLGKCENTIIGNSFIRGVSGGERKRVSIAHEMLVDPSLLILDEPTSGLDSTAAHRLVVTLGSLAKKGKTVITSLHQPSSRVYQMFDKVLVLSEGQCLYFGKGSDAMRYFQSVGFAPSFPMNPADFLLDLANGVCHVDGQSEKDRPNIKQRLIHSYNTVLGPKVKAACMDTANVPTKNTQPLRSSSSKERRRSDRVSFLDWFYQFSILLQRSLKERKHESFNTLRVCQVIAAALLAGLMWWHSDYRNIQDRLGLLFFISIFWGVFPSFNSVFAFPQERAIFMKERASGMYTLSSYFMARIVGDLPMELILPTIFLIVTYWMGGLKPDLWAFLLTLLVVLGYVMVSQGLGLALGAAIMDAKQASTVAAVTMLAFVLTGGYYVHKVPSCMAWIKYISTTFYCYRLLTRIQYEDGKKISYLLGCYHGDKGGCRFVEEDVVGQIGTLGCIGVLLFMFVFYRILAYLALRRIKS 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01222 748 MobiDBLite consensus disorder prediction 147 169 - -
Pumo3g01222 748 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 106 740 - -
Pumo3g01222 748 Pfam ABC-2 type transporter 482 687 IPR013525 GO:0016020|GO:0140359
Pumo3g01222 748 MobiDBLite consensus disorder prediction 151 168 - -
Pumo3g01222 748 Gene3D - 165 392 IPR027417 -
Pumo3g01222 748 MobiDBLite consensus disorder prediction 72 115 - -
Pumo3g01222 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 391 IPR027417 -
Pumo3g01222 748 Pfam ABC-2 type transporter 355 478 IPR043926 GO:0140359
Pumo3g01222 748 MobiDBLite consensus disorder prediction 74 115 - -
Pumo3g01222 748 FunFam ABC transporter G family member 22 163 392 - -
Pumo3g01222 748 SMART AAA_5 184 375 IPR003593 GO:0016887
Pumo3g01222 748 CDD ABCG_EPDR 172 380 - -
Pumo3g01222 748 Pfam ABC transporter 175 326 IPR003439 GO:0005524
Pumo3g01222 748 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 136 398 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01222 Pumo-Chr3 19691648 19699009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01222 185 412 Calmodulin-binding Proteins AT2G36910 29.237 2.42e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01222 K05681 - gmx:100812367 1233.39