Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01220 ATGGGTACCTCGAATCTTCTCTTGTTCTTCTCTCTGGTGAGTCTGTGTGCTATGGCGGCTTCCAAGGTGGTGCTTATTGGGAACAATATCACTCTCTCCTTCGATGATATTGAAGCTAATTTTGCCCCAACAGTCAAAGGTTCTGGAGAATATGGGGTCTTATATTTGGCAGAACCACTGGATGCGTGTACAGAATTGACAAATAAAGTTGAACAACTTCCCAATGCGAGTTCACCTTTTGCTTTGGTGGTTAGAGGGGGATGTAGCTTTGAGGAAAAAGTCAGAAGGGCACAAAAGGCTGGCTTCAAAGCTGTAATTGTCTATGACAATGAAGATGGCGGCATCTTGGTTGCGATGGCAGGAGATTCTGCTGGTATAAGAATACACGCTGTATTTGTATCTAAATCTTCAGGTGAAATACTAAAGAAATATGCTGGGTTGACTAATGTGGAAATATGGCTTATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTTATTTCCCTGCTAGCTATGTCTGCGGTGCTGGCCACTTGTTTCTTCGTCCGCAGGCATCGCATAAGAAGAGAAAGGCCTCGAGCTTCTCTTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATATTTACTGCTGTTTTAGAAGATAACTGTACATCAAGAACATGTGCTATATGCCTTGAAGACTATTGTGTTGGTGAGAAGCTCAGGATTTTACCCTGCTGTCACAAGTTCCATGCTGCCTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCGGTTTGTAAGCGTGATGCTAGAACCGGCTTAACTGATCCACCTCCTTCAGAATCCACACCTTTACTCTCATCAACCCCAGCATCTGTGGCATCCTCTGTCTTATCTTCTGCTAGATCATCACTAGCTTCATCTTCAGCAATACAAATTGCCCGGACAGCATCTATGGCATCCTCTGCCTTACCTTCTGCAAGATCATCGCTAGCTTCATCTTTAGCAGTACAAATTGCCCGGACAGCTTCACAGACCCCATCTGTTTCTCGTAACCACTCCATTGCCAGTACACCTTATGTTCAGCCATCTCTTAGATCCTCCTACCATCAATCCCCCTCCCTAAGCATCAGCCGAAGCTCCGTAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCTCACTTGAATTCACCACGTTCCATGGGATATCCGTCTTTGTCATCTCTCAACTCAAGATACTTGTCTCCACACATTCCAAGTCCAAGCAACGCTTCGGTAAGCTATATGGGTTCATCCAGTCATCAACAACATCCTCTCCGTTATAGCGAGTCAGCTGCAAGCTTCTCGCCGTTTGCATCGACACACTCCCTTCCAGAATGTTAA 1410 0.4468 MGTSNLLLFFSLVSLCAMAASKVVLIGNNITLSFDDIEANFAPTVKGSGEYGVLYLAEPLDACTELTNKVEQLPNASSPFALVVRGGCSFEEKVRRAQKAGFKAVIVYDNEDGGILVAMAGDSAGIRIHAVFVSKSSGEILKKYAGLTNVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASLVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSTPASVASSVLSSARSSLASSSAIQIARTASMASSALPSARSSLASSLAVQIARTASQTPSVSRNHSIASTPYVQPSLRSSYHQSPSLSISRSSVDLRNASQRSLASHLNSPRSMGYPSLSSLNSRYLSPHIPSPSNASVSYMGSSSHQQHPLRYSESAASFSPFASTHSLPEC 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01220 469 Pfam Ring finger domain 232 275 IPR001841 -
Pumo3g01220 469 SUPERFAMILY PA domain 79 144 IPR046450 -
Pumo3g01220 469 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 21 155 - -
Pumo3g01220 469 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 157 290 - -
Pumo3g01220 469 CDD PA_C_RZF_like 19 162 IPR044744 -
Pumo3g01220 469 Pfam PA domain 80 141 IPR003137 -
Pumo3g01220 469 ProSiteProfiles Zinc finger RING-type profile. 233 275 IPR001841 -
Pumo3g01220 469 SMART ring_2 233 274 IPR001841 -
Pumo3g01220 469 MobiDBLite consensus disorder prediction 369 390 - -
Pumo3g01220 469 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 193 280 - -
Pumo3g01220 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 280 IPR013083 -
Pumo3g01220 469 SUPERFAMILY RING/U-box 223 285 - -
Pumo3g01220 469 Gene3D - 21 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01220 Pumo-Chr3 19640769 19646589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01220 20 468 C3H Transcription Factor Family AT1G22670 46.256 5.95e-119 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01220 K15692 - gmx:100791248 806.208