LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g01213	ATGGCCACCGATACAACAACAGCTTCATCCTCTGTATCTGTATTTTCTCCCGAGAAATTGAATTTCTGGCTCAATAACCCTTCACCAATTTCCCTGACTTCGGTTCAGGTGAAGCACTGCAGGGAAGCCCTCGCGTTATTGAAGGACAAGTTCGACCACACTCATGAGAGGATCATCCAGGAGTTCAAACTCTTAGAGGATAACAGGGCAGTAACAGAAAGTGAGACCGATAAAATATGCGCCGTAGCTCTTGATCCTGTCAATTCCAGCAAAAATCGACACGACGTTTATCCACTTGACAAGAACAGGATTATTCTGAAGTCAACACAAGGTTATATCAACGCAAGCCCTATCTCGACATCGTTCCCTGGAAATATATCAAAGTTTATTGCTACACAAGGTCCACTTGAAAAAACTTATGGAGATTTCTGGGAAATGGTCATCCAACATCACTGTCCTGTAATTGTCATGCTTACTAACTTGGTCGACCATAACGGGATTGATGAGTTGTGCGGAGATTATTTTCAAACGAAGGATGGAACTAGAGATGTTGGTAAAAATATCTCTATTATCAGGAAAGGGGTGAAAACTACAGAGACTTCGCCGCTGGTACTGAGCCATATCGAGGTCAACCATAGAGATCAGGTAGAAGATACGCCATTATCTGTTTTGCATATTCATCACACTACATGGCCTGACCATGGAGTTCCCAATGATACATCTGCTGTTCGTGAAATTTTTAAAAGATTTTATCATTTAGAACCAAACCTTGGCCCCATAGTGGTGCACTGCAGTGCTGGTATTGGTAGAACTGGAACATACTGCACCATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCTGCTGTAAATATTGCTGACACAGTGGCTACGTTCAGGACCCAGCGTCTTAGAATGGTCCAGACTGAGGCTCAGTACAATTTCTGCTATAAAGCTATCATAGAAGAACTGGATGAACTTGTATCTCAACAGTAA	1002	0.4232	MATDTTTASSSVSVFSPEKLNFWLNNPSPISLTSVQVKHCREALALLKDKFDHTHERIIQEFKLLEDNRAVTESETDKICAVALDPVNSSKNRHDVYPLDKNRIILKSTQGYINASPISTSFPGNISKFIATQGPLEKTYGDFWEMVIQHHCPVIVMLTNLVDHNGIDELCGDYFQTKDGTRDVGKNISIIRKGVKTTETSPLVLSHIEVNHRDQVEDTPLSVLHIHHTTWPDHGVPNDTSAVREIFKRFYHLEPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSAVNIADTVATFRTQRLRMVQTEAQYNFCYKAIIEELDELVSQQ	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g01213	333	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	237	316	IPR000387	GO:0016311\|GO:0016791
	Pumo3g01213	333	ProSitePatterns	Tyrosine specific protein phosphatases active site.	262	272	IPR016130	GO:0016311\|GO:0016791
	Pumo3g01213	333	Pfam	Protein-tyrosine phosphatase	88	324	IPR000242	GO:0004725\|GO:0006470
	Pumo3g01213	333	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	52	326	IPR029021	-
	Pumo3g01213	333	PRINTS	Protein tyrosine phosphatase signature	292	307	IPR000242	GO:0004725\|GO:0006470
	Pumo3g01213	333	PRINTS	Protein tyrosine phosphatase signature	129	149	IPR000242	GO:0004725\|GO:0006470
	Pumo3g01213	333	PRINTS	Protein tyrosine phosphatase signature	259	277	IPR000242	GO:0004725\|GO:0006470
	Pumo3g01213	333	PRINTS	Protein tyrosine phosphatase signature	308	318	IPR000242	GO:0004725\|GO:0006470
	Pumo3g01213	333	PRINTS	Protein tyrosine phosphatase signature	221	238	IPR000242	GO:0004725\|GO:0006470
	Pumo3g01213	333	PRINTS	Protein tyrosine phosphatase signature	111	118	IPR000242	GO:0004725\|GO:0006470
	Pumo3g01213	333	ProSiteProfiles	PTP type protein phosphatase domain profile.	58	325	IPR000242	GO:0004725\|GO:0006470
	Pumo3g01213	333	SMART	ptp_7	222	324	IPR003595	-
	Pumo3g01213	333	SMART	PTPc_3	57	327	IPR000242	GO:0004725\|GO:0006470
	Pumo3g01213	333	PANTHER	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	39	326	-	-
	Pumo3g01213	333	Gene3D	Protein tyrosine phosphatase superfamily	30	330	IPR029021	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g01213	Pumo-Chr3	19507030	19512652	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g01213	36	331	Protein tyrosine phosphatase (PTP) family	AT1G71860	57.947	1.70e-115	336

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g01213	-		-	gmx:548044	399.053

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo3g01213	3	19507030	19512652	Pumo3g01213	3	19507030	19512652	ECH