Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01212 ATGGCCGGCAAGTCCACCACCACTTCCTCCTCCGCATTATCTCCCGAGAAATTCAATTTCTCCCCCGATAACCCCTCCCGAATCACCCTCACTTCGGATCAGGTCAACCACTGCACCCAAGCCCTCAACCTTCTGAAGGAGAAACTCCACGCTCCTCACGTGATCACTCAGGAGTTCTCACACTTGCAGGCGAACAGGATAACGCCGAGTGAGATGAGGAGAAGATGCACCGTCGCGCTTGACGCCGTCAATTTGAGCAAAAACCGATACACGGACGTTTTGCCATTTGACAAGAACAGGGTTGTTCTCAAATCAAGTACTGATTATAGACCTGCAGCACAGGGGTATATCAATGCAAGCATTGTCTCGACCTCCTCCGCTGGAAATGTGTCCCAGTTTATAGCCACACAAGGTCCTCTTCCACATACTTATGAGGATTTCTGGGAAATGATTATCCAATATCACTGCCCTGCAATTATCATGCTTACTAGGTTGGTGGACAATTACAAGATGGTAAAGTGTGGAGATTATTTTCAAGCGGAGGATGGGCCTAGGGAAGTTGGTAATATCTCTATTATTGGTAAATGGGCGAACACTACTGAAACTTCACTTGTGCTGCGCCATTTGGAGGTGAACCATAGAGAGGTAGAAGATGCACCATTATCTGTTTTGCATATTCAGTATCCTGAATGGCCCGACCATGGAGTTCCCAAAGATACATTTGCTGTGCGTGAAATTTTGAAAAGATTATACCATTTACCTCCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGTAGAACTGGAACATACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCTGCTGTAGATATTGCTAACACAATAGCTGTGTTCAGGTCCCAGCGTATTGGAATGGTTCAGACCCAGGATCAGTACATTTTCTGCTATAAAGCTATCATAGATGAACTGGAAGACCTTGTATCTCAGCAGCAATAG 1005 0.4567 MAGKSTTTSSSALSPEKFNFSPDNPSRITLTSDQVNHCTQALNLLKEKLHAPHVITQEFSHLQANRITPSEMRRRCTVALDAVNLSKNRYTDVLPFDKNRVVLKSSTDYRPAAQGYINASIVSTSSAGNVSQFIATQGPLPHTYEDFWEMIIQYHCPAIIMLTRLVDNYKMVKCGDYFQAEDGPREVGNISIIGKWANTTETSLVLRHLEVNHREVEDAPLSVLHIQYPEWPDHGVPKDTFAVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSAVDIANTIAVFRSQRIGMVQTQDQYIFCYKAIIDELEDLVSQQQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01212 334 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 327 IPR029021 -
Pumo3g01212 334 ProSitePatterns Tyrosine specific protein phosphatases active site. 262 272 IPR016130 GO:0016311|GO:0016791
Pumo3g01212 334 CDD PTPc_plant_PTP1 116 319 - -
Pumo3g01212 334 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 244 316 IPR000387 GO:0016311|GO:0016791
Pumo3g01212 334 SMART ptp_7 222 324 IPR003595 -
Pumo3g01212 334 Gene3D Protein tyrosine phosphatase superfamily 27 327 IPR029021 -
Pumo3g01212 334 SMART PTPc_3 54 327 IPR000242 GO:0004725|GO:0006470
Pumo3g01212 334 FunFam Tyrosine-protein phosphatase non-receptor type 12 32 333 - -
Pumo3g01212 334 Pfam Protein-tyrosine phosphatase 84 323 IPR000242 GO:0004725|GO:0006470
Pumo3g01212 334 PRINTS Protein tyrosine phosphatase signature 292 307 IPR000242 GO:0004725|GO:0006470
Pumo3g01212 334 PRINTS Protein tyrosine phosphatase signature 259 277 IPR000242 GO:0004725|GO:0006470
Pumo3g01212 334 PRINTS Protein tyrosine phosphatase signature 308 318 IPR000242 GO:0004725|GO:0006470
Pumo3g01212 334 PRINTS Protein tyrosine phosphatase signature 115 122 IPR000242 GO:0004725|GO:0006470
Pumo3g01212 334 PRINTS Protein tyrosine phosphatase signature 133 153 IPR000242 GO:0004725|GO:0006470
Pumo3g01212 334 PRINTS Protein tyrosine phosphatase signature 221 238 IPR000242 GO:0004725|GO:0006470
Pumo3g01212 334 ProSiteProfiles PTP type protein phosphatase domain profile. 55 325 IPR000242 GO:0004725|GO:0006470
Pumo3g01212 334 MobiDBLite consensus disorder prediction 1 25 - -
Pumo3g01212 334 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 47 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01212 Pumo-Chr3 19501188 19505871 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01212 3 331 Protein tyrosine phosphatase (PTP) family AT1G71860 64.653 8.95e-167 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01212 - - gmx:548044 637.106