Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01195 ATGTCTCAAACAGCTCAAGTTTCCAAGACCAAGCCAATGGAAAATTACCTTCCACCATTGATTTACAAAAACCCCATTAGAAGAACCTCTAGGCGATCTACAATGTATCTTGGTGTGAGAAAAAGGCCATGGGGAAGATATGCTGCTGAGATTAGGAACCCATACACCAAAGAGAGACACTGGCTAGGCACATTTGACACTGCTGAAGACGCTGCTATAGCTTATGATCTTTCATCTATCAAGATTTGTGGCATTAATGCTCGAACTAATTTTCATTACCCTTTTGTGTCTCTTCCACCACCTCCTATGTCATTGCCTCCTCCACCGCCGCCACCGACCCCAGAGTTGGATCCAAGTGTTGAAGTTTGTCCAGAGATGAATGCTGCTCACGATGGCGATGATGAATCTCTGGTTATTGCTTCCATTTTGCAAAGCTTTTCTAGTTCTGGTAACTGTTCTTTTTAG 465 0.4344 MSQTAQVSKTKPMENYLPPLIYKNPIRRTSRRSTMYLGVRKRPWGRYAAEIRNPYTKERHWLGTFDTAEDAAIAYDLSSIKICGINARTNFHYPFVSLPPPPMSLPPPPPPPTPELDPSVEVCPEMNAAHDGDDESLVIASILQSFSSSGNCSF 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01195 154 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 28 117 - -
Pumo3g01195 154 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Pumo3g01195 154 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Pumo3g01195 154 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Pumo3g01195 154 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Pumo3g01195 154 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Pumo3g01195 154 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Pumo3g01195 154 CDD AP2 36 91 IPR001471 GO:0003700|GO:0006355
Pumo3g01195 154 Pfam AP2 domain 37 82 IPR001471 GO:0003700|GO:0006355
Pumo3g01195 154 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01195 Pumo-Chr3 19236758 19237222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01195 36 93 AP2-EREBP Transcription Factor Family AT1G12890 75.862 4.18e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g01195 AP2 2.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01195 - - gmx:100816937 248.054