Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo3g01192 | ATGGGGTTACCTTCCACATCATTAGACACTAGCTGGTGGGTGTTTACACTTCCAGCCATAGCAGGATCACAAAACTTACTTCACAACCCCGTCTTGGTAATCCTAGCTACACTTCTTTCCATTGGACTTCTATTATGGGCCTTCCAAAGACGAGGTGCAGGAAGGAACCAAATGGGTCAGGTCCATATACCCGGGCCCAAAGGAGTCCCACTCTTCGGCCACTTATTCAGCCTCAACCATGGCCAACCTCACCGCACCCTCGCTTCCATGGCCTCAACACTTTCCGCCACAAAACTCATGGCCTTCACTTTGGGGTCAACCCCAGCAGTTGTAACCTCAAACGCTGACGTGGCGCGTGAAATCTTGAACTCACCCCATTTCGCTGACCGTCCCGTTAAACAATCCGCTAAGAGCCTCATGTTCAACCGAGCCATTGGGTTCGCACCAAACGGCGCGTATTGGCGCTTGCTGCGTAGGGTTGCCTCAACCCACCTCTTCTCCCTGCGGCGCATTCTAGCCCACGAGCCCCGTCGTTTGCTAGACTGCGCCGCCATGTTGCGCGCTATAGCTCACGAACAATCCAAACACGGGTTCGTATGCCTAAGGAAACACCTTCAAGATGCAGCTCTTAATAACGTTATGGGCACTGTTTTTGGAAGAAGGTACAACCATGACGAAAGCAATAATAATAGCTACGAGGTTGAAGAGGTGCGTGACATGGTGAGGGAAGGGTTTGAGATTTTGGGAGCTTTCAACTGGTCTGATTATGTTCCTTGGATCAGCTTCTTTTATGATCCTTTGCGTATTCGAGAACGGTGCTCGGTTCTTGCGCCGAGAGTTAAGAGATTTGTGAGACGGGTTTTGGAGGAGCACCGAATAATGGCTCCGTTCAAGGAACTTTCTGATGACTCGGACTTTGTGGACGTGCTGCTTTCCCTAGAGGGGGATGACAAGCTCCAAGATGATGATATTATTGCCGTTTTATGGGAGATGATATTTCGTGGCACGGATACCACAGCACTTCTTACAGAGTGGGTAATGGCGGAACTTGTCTTGAACCAACAAGTGCAGACTAGGCTTCGCGAAGAGCTTGACAGGGTCGTGGGAAACAAAAGGGTAATTACAAACGCTGATGTGATCAAATTGCCATACCTAGAAGCCATTGTGAAGGAAACATTGCGATTGCATCCAATTGGGCCTCTCCTTTCTTGGGCCCGTTTGTCCACGTCAGATGTCCAGCTCAGCAATGGGATGGTGGTCCCAGCCAACACCACAACAATGGTGAACATGTGGGCCATAACCCACGACCCAAATGTGTGGCAGGAGGCACTCGTGTTTAAGCCAGAGAGGTTTGTGAAGAGTGAAGGAGGGGTTGAAGTGGACGTTAGAGGTGTTGACCTTAGGCTTGCACCTTTTGGAGCTGGACGTAGGGTTTGCCCTGGCAAGAACCTAGGCCTCGTGACTGTGAGCCTTTGGGTGGCTAACTTGGTTCACCACTTTCAATGGGTCCAAGACATGGCTAACCCAGACCCAGTTGACCTAACCGAGGTGCTCAAGCTATCTTGTGAGATGAAGAATCCCCTCAAAGCTGTGGCTCTTCCTATAGGTTTATTTAATTAA | 1620 | 0.5012 | MGLPSTSLDTSWWVFTLPAIAGSQNLLHNPVLVILATLLSIGLLLWAFQRRGAGRNQMGQVHIPGPKGVPLFGHLFSLNHGQPHRTLASMASTLSATKLMAFTLGSTPAVVTSNADVAREILNSPHFADRPVKQSAKSLMFNRAIGFAPNGAYWRLLRRVASTHLFSLRRILAHEPRRLLDCAAMLRAIAHEQSKHGFVCLRKHLQDAALNNVMGTVFGRRYNHDESNNNSYEVEEVRDMVREGFEILGAFNWSDYVPWISFFYDPLRIRERCSVLAPRVKRFVRRVLEEHRIMAPFKELSDDSDFVDVLLSLEGDDKLQDDDIIAVLWEMIFRGTDTTALLTEWVMAELVLNQQVQTRLREELDRVVGNKRVITNADVIKLPYLEAIVKETLRLHPIGPLLSWARLSTSDVQLSNGMVVPANTTTMVNMWAITHDPNVWQEALVFKPERFVKSEGGVEVDVRGVDLRLAPFGAGRRVCPGKNLGLVTVSLWVANLVHHFQWVQDMANPDPVDLTEVLKLSCEMKNPLKAVALPIGLFN | 539 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo3g01192 | 539 | Gene3D | Cytochrome P450 | 55 | 532 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Pumo3g01192 | 539 | PANTHER | CYTOCHROME P450 78A7-RELATED | 10 | 533 | - | - | |
| Pumo3g01192 | 539 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 472 | 481 | IPR017972 | GO:0005506|GO:0016705 | |
| Pumo3g01192 | 539 | CDD | CYP78 | 95 | 528 | - | - | |
| Pumo3g01192 | 539 | PRINTS | P450 superfamily signature | 334 | 351 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Pumo3g01192 | 539 | PRINTS | P450 superfamily signature | 387 | 398 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Pumo3g01192 | 539 | PRINTS | P450 superfamily signature | 470 | 479 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Pumo3g01192 | 539 | PRINTS | P450 superfamily signature | 479 | 490 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Pumo3g01192 | 539 | Pfam | Cytochrome P450 | 64 | 512 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Pumo3g01192 | 539 | FunFam | Cytochrome P450 78A5 | 55 | 534 | - | - | |
| Pumo3g01192 | 539 | PRINTS | E-class P450 group I signature | 323 | 340 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Pumo3g01192 | 539 | PRINTS | E-class P450 group I signature | 469 | 479 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Pumo3g01192 | 539 | PRINTS | E-class P450 group I signature | 208 | 226 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Pumo3g01192 | 539 | PRINTS | E-class P450 group I signature | 429 | 453 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Pumo3g01192 | 539 | PRINTS | E-class P450 group I signature | 479 | 502 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Pumo3g01192 | 539 | PRINTS | E-class P450 group I signature | 343 | 369 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Pumo3g01192 | 539 | PRINTS | E-class P450 group I signature | 386 | 404 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Pumo3g01192 | 539 | SUPERFAMILY | Cytochrome P450 | 63 | 533 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo3g01192 | Pumo-Chr3 | 19191406 | 19193820 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo3g01192 | 7 | 535 | Cytochrome P450 | AT5G09970 | 61.639 | 0.0 | 667 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo3g01192 | K20619 | - | pop:7480731 | 736.873 |