Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01188 ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGCCCAGTAGTCTCTTTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGATTCTGTGAGTATAAGGATGAAGAGACAGCTTTAAGTGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGGCGGCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGGAATGATAGAAATCGAGAACAGGGTCGTGGTGGTCCTGGAATGACAACAAATGTTGACCATCAGAAACAAGTTGGTGGCCCAGCTGTCCATGGGGAAGTTGTTCAGCATCAGCCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACAGCAGCTCTGGGTGGTGCTCAGTTTGGCATCCAGTCAAATCAAAATACTTTGCAGAGTCAGTCAGCATTGGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGACTGAGATTATCTCTGAGCTCAAGGGAATGGCTACACAAAACAAGGAACTGGCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCCAAGGCTCTTTTTCAGGCTCAGATAATGCTAGGAATGGTGACTTCCCAAGTGTTACAAATGCCAAACCTTAGGCTGGTTTCAGATCAAACCTCACAGTCTTTAATGAATGAAGGCCAGTTGGGTCAGCCATCATCAGTTCAAACTCTGTCAGGCCTTCCTCCTCATGGGCAGAGCAAGTTGCAGTCTGGTTTGACACCGTATGCTCAAGAAGGCCAAGTGAACACCTTACCTCATAATCCTTTGGCTCCTAATCAATTAACTGCACATCCAAAGCCCCCAGTGCAGCCTCGGATTCCCCTTCAGCAACATCCTAACAATCTTGTACTGCCAGGAACATTGTCAGGGCAGCCTAATTTAATGCTTCCTTCTGTGCGTCCTCCAGGTTTGGGCAGTTTGTCTGTTAGGCCTCCAATTCAACCGGCAACTTCAACTGCTCTGAACCAGCAAATGCATGCCTCTTTGCTACAACATTCTGTCCATGTTGGAAACTCAACTGTAGGACATAATATTCAAATGGTTCGTCCAGACGGCAACTTTCAGTCTGGCCCCTCCATGTCATCAATTAATTCTCAGTTATTGAGTAAACGTGATAAATCTTCTAAAGTTCTTGAGGATTTAAATTGGGCCAAGAGAACTAATACATATTCAAACATGCCTTTGGGAGTAGAGAAAACAAACATGGTTCATGATTCTTCAGAATCTTTTACTCGGCCGTCAAAGGTCATGAAATTGGATGAGGGAAGGAACACCTCTCTTTCTGCAGGGATTTCAGACATGCCTGTCACTGATGGATCACCTCATGTCCTTGGAAGAAGCTCATTACCTGTACATGCAGCTCCTAAAGCAGAAGGGCAATACCCTGAGCAACAATCTTCTCAGCTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACACCAGAGCAATTGAGTTCCTTGCCACCAGATCAGCAACAACAGGTCATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATACAGCCCTCATAA 1656 0.4565 MATSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGMTTNVDHQKQVGGPAVHGEVVQHQPIGLHIAITAAAVMTAALGGAQFGIQSNQNTLQSQSALAHDPLTLHLAKMSRSQLTEIISELKGMATQNKELARQLLLSRPQLPKALFQAQIMLGMVTSQVLQMPNLRLVSDQTSQSLMNEGQLGQPSSVQTLSGLPPHGQSKLQSGLTPYAQEGQVNTLPHNPLAPNQLTAHPKPPVQPRIPLQQHPNNLVLPGTLSGQPNLMLPSVRPPGLGSLSVRPPIQPATSTALNQQMHASLLQHSVHVGNSTVGHNIQMVRPDGNFQSGPSMSSINSQLLSKRDKSSKVLEDLNWAKRTNTYSNMPLGVEKTNMVHDSSESFTRPSKVMKLDEGRNTSLSAGISDMPVTDGSPHVLGRSSLPVHAAPKAEGQYPEQQSSQLPPDVESVLLQQVLNLTPEQLSSLPPDQQQQVIQLQQALRRDQIQPS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01188 551 Gene3D - 1 118 IPR012677 -
Pumo3g01188 551 Gene3D - 150 232 - -
Pumo3g01188 551 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Pumo3g01188 551 FunFam Cleavage stimulating factor 64 157 232 - -
Pumo3g01188 551 SUPERFAMILY RNA-binding domain, RBD 5 105 IPR035979 GO:0003676
Pumo3g01188 551 MobiDBLite consensus disorder prediction 245 293 - -
Pumo3g01188 551 CDD RRM_CSTF2_RNA15_like 9 85 - -
Pumo3g01188 551 MobiDBLite consensus disorder prediction 461 483 - -
Pumo3g01188 551 FunFam Related to Cleavage stimulation factor 504 546 - -
Pumo3g01188 551 Pfam Hinge domain of cleavage stimulation factor subunit 2 161 230 IPR025742 -
Pumo3g01188 551 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 547 - -
Pumo3g01188 551 SMART rrm1_1 10 83 IPR000504 GO:0003723
Pumo3g01188 551 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Pumo3g01188 551 Gene3D - 504 547 IPR038192 -
Pumo3g01188 551 FunFam Cleavage stimulating factor 64 2 118 - -
Pumo3g01188 551 Pfam Transcription termination and cleavage factor C-terminal 513 545 IPR026896 GO:0031124
Pumo3g01188 551 MobiDBLite consensus disorder prediction 245 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01188 Pumo-Chr3 19170020 19177789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01188 11 165 Eukaryotic Initiation Factors Gene Family AT1G22760 28.205 9.63e-08 53.1