Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01185 ATGGGTGAGGTTTCGGGAGCTGCTTCCGCTGATTGTTTCAGCCAGATGATGTCGTCGATGCCGGGTTTTCGCTTCCATCCCACGGATGAGGAGTTGATTATGTATTATCTGAAGCGGAAGATTTGTGGGAAGAGGCTGAAGCTCGACGTGATTCGTGAAACCGATGTGTATAAGTGGGATCCTGAGGATTTGCCTGGGCAATCTATACTGAAAACTGGAGATAGGCAATGGTTCTTTTTCTGTCACAGAGATAGGAAGTATCCTAATGGTGGAAGGTCTAACCGAGCAACCAGACATGGGTATTGGAAAGCAACAGGAAAGGATCGTAATGTGATATGCAATTCTAGGACAGTTGGAGTGAAAAAGACCCTGGTTTTCTATGCAGGCAGAGCTCCTAGTGGTGAGCGGACTGATTGGGTTATGCATGAATACACCTTGGATGAAGAGGAGCTTAAGAGATGCCAGGGTGTTAAGGACTATTATGCACTTTACAAGGTTTACAAGAAAAGTGGACCCGGTCCTAAAAATGGTGAACAATATGGTGCACCATTTAATGAAGAAGCGTGGGCTGATGATGACATAGTAGATTTTAATGTTAACACAGCTGATCGGGAGGCTCCAAATGATGTTGCTGAGAATGTTAATGTACTGCCGTTTTTGCTTGATGGTGATGAAATCGACAACATCTTTAGGGAAATTTTGGATGATGAGCTTGTCCTTGACCAGCAGCATGTGAATGGTTATCCTGACTTTCCTCAGGTTGTTACTGAAGAAACACAAAGTACTGTTGTGGATCAGTTTTCTGAAGGCGTGATGTTGTCTGAGCCAATCAGAACCATACATCCTAGCAGCCAATTTTTTGATGCACAGCCTATCTTTGACTTCAATCAGCCAGTTACTTCTCATTTACATGTTTCTGAAGCATCTGAGGTCTCTTCTGCTTCCAACATTAAAACAAAGGAGCTTGACTTTAATGAGGATGGCTTCTTGGAAATTAATGATCTCATTGATACTGATGCTACATTCTCAAATGTGGAAAAAGCCTGTGGAGTACCAGCAGTTTGA 1065 0.431 MGEVSGAASADCFSQMMSSMPGFRFHPTDEELIMYYLKRKICGKRLKLDVIRETDVYKWDPEDLPGQSILKTGDRQWFFFCHRDRKYPNGGRSNRATRHGYWKATGKDRNVICNSRTVGVKKTLVFYAGRAPSGERTDWVMHEYTLDEEELKRCQGVKDYYALYKVYKKSGPGPKNGEQYGAPFNEEAWADDDIVDFNVNTADREAPNDVAENVNVLPFLLDGDEIDNIFREILDDELVLDQQHVNGYPDFPQVVTEETQSTVVDQFSEGVMLSEPIRTIHPSSQFFDAQPIFDFNQPVTSHLHVSEASEVSSASNIKTKELDFNEDGFLEINDLIDTDATFSNVEKACGVPAV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01185 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 256 - -
Pumo3g01185 354 SUPERFAMILY NAC domain 14 169 IPR036093 GO:0003677|GO:0006355
Pumo3g01185 354 ProSitePatterns EF-hand calcium-binding domain. 323 335 IPR018247 -
Pumo3g01185 354 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Pumo3g01185 354 Pfam No apical meristem (NAM) protein 21 146 IPR003441 GO:0003677|GO:0006355
Pumo3g01185 354 Gene3D NAC domain 28 172 IPR036093 GO:0003677|GO:0006355
Pumo3g01185 354 FunFam Nac domain-containing protein 86 28 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01185 Pumo-Chr3 19112959 19114964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01185 12 336 NAC Transcription Factor Family AT1G34190 52.083 6.33e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo3g01185 NAM 1.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01185 - - gmx:100787232 639.417