Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01177 ATGGCGGCAGCGATTTCTTCACCGATGACTCAGTCTGTGGCGGCGGCGGCGGCGGCTCCAGTGATGACTCCGGCAGCCGCATTGGGCGGAGGACCCTTTGCGAATGCGTCTCTGTACGTTGGCGATCTCGAGGGGAATGTAAACGAGGAGCAACTTTATGATCTGTTCAGTCAGGTGGCTCAGATTGTTTCAATTAGGGTTTGCAGGGATCAGACCAAGCGATCCTCTCTTGGTTACGCCTATGTCAACTTTGCCAACGCTCAGGACGCATCCAATGCCATGGAACTTCTGAACTTCACTTCTCTGAATGGAAAAGCGATTCGAATTATGTTTTCCCAACGTGATCCAAGCATTCGGAAAAGTGGACATGGCAACGTGTTCATTAAGAACCTGGATACATCAATTGATAACAAGGCATTACATGACACTTTTGCTGCCTTTGGCACTGTACTTTCTTGTAAGGTGGCTCTTGACAGCAATGGCCAGTCAAAAGGGTATGGTTTTGTTCAGTTTGACAATGAAGAGGCTGCCCAGAATGCAATCAAACGGTTGAACGGCATGTTGATAAATGATAAACAAGTCTACGTTGGATTATTTATTCGGCACCAGGAAAGGACGCGGACAAATGGATCACCCAAGTTCACTAATGTATATGTGAAAAATTTGTCTGAAACATATACTGATGAGGACCTGAAGAAGCTATTTAACCCCTATGGTACAATAACCAGTGCAACAATTATGAAAGATGTGAATGGGAAGTCTAGATGTTTTGGTTTTGTGAATTTCCAGAGTCCAGATTCAGCAGCTGCTGCAGTTGAGAGGTTAAATGGAACTATTATCAATGATGACAAGGTTTTATACGTTGGGAGAGCCCAGAGGAAGGCAGAAAGAGAGGCTGAGTTGAAAGCGAAAATTGAGCAGGAAAGAATCAGTAGATATGAAAAATTACAAGGTGCTAATTTGTACCTGAAAAATCTTGATGACAGCTTCAGTGATGAGAAGTTGAAGGATCTATTTTCTGAGTTTGGAACTATAACATCTTGCAAGGTGATGGTTGATTCACATGGGCATAGCAAGGGGTCTGGTTTTGTTGCCTTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGCAAGTTGATTGGACGAAAGCCTCTGTATGTTGCTGTGGCCCAGCGCAAAGAAGATAGGAAGGCTCATCTACAGGCTCAATTTGCTCAAATCCGAGCACCTGGTGGAATGACACCTCTGCCGGCTGGTATTCCTGTATATCATCCAGGGGCACCTAGACTTGCCCCTCAACAGTTGTATTATGGTCAAGGCACACCTGGCTTCATGCCACCACAGCCTGCTGGATTTTCTTACCAGCAGCAAATCTTGCCTGGAATGCGGCCTGGTGTCGCCCCCAATTTCATTATGCCTTACCACCTTCAGAGACAGGGTCAGCCTGGGCAGAGGACGGGTGTTCGAAGAAATGGAAACCTTCAACAGGTGCAACAGAACCAGATGTTACATCGTAACTCCAACCAAGGGTTTAGATACATGCCCAATGGTCGAAATGGCGTTGATCCATCTTTAGTTCCTCATGGTCTTATGGGTCAAATGATGCCTATGCCCTTTGATGGTTCTGGAGTCACTGCAGCTCCTAATGATAATCAGCGTCCTGGAGCATTGTCTACCACACTTGCCTCAGCTCTTGCCTCTGCTACCCCAGAAAATCAGCGCATGATGTTGGGTGAACATCTATATCCCCTTGTGGAACGTCTTGCACCAAACCAATACACATGCAAAGGTGACAGGGATGTTGCTGGAAATGGACCAGTCAGAGGTAATCAATCTCATTGA 1854 0.459 MAAAISSPMTQSVAAAAAAPVMTPAAALGGGPFANASLYVGDLEGNVNEEQLYDLFSQVAQIVSIRVCRDQTKRSSLGYAYVNFANAQDASNAMELLNFTSLNGKAIRIMFSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSNGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRHQERTRTNGSPKFTNVYVKNLSETYTDEDLKKLFNPYGTITSATIMKDVNGKSRCFGFVNFQSPDSAAAAVERLNGTIINDDKVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDEKLKDLFSEFGTITSCKVMVDSHGHSKGSGFVAFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEDRKAHLQAQFAQIRAPGGMTPLPAGIPVYHPGAPRLAPQQLYYGQGTPGFMPPQPAGFSYQQQILPGMRPGVAPNFIMPYHLQRQGQPGQRTGVRRNGNLQQVQQNQMLHRNSNQGFRYMPNGRNGVDPSLVPHGLMGQMMPMPFDGSGVTAAPNDNQRPGALSTTLASALASATPENQRMMLGEHLYPLVERLAPNQYTCKGDRDVAGNGPVRGNQSH 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01177 617 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 36 595 IPR006515 GO:0003723
Pumo3g01177 617 Coils Coil 288 316 - -
Pumo3g01177 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Pumo3g01177 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 284 IPR000504 GO:0003723
Pumo3g01177 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 194 IPR000504 GO:0003723
Pumo3g01177 617 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 389 IPR000504 GO:0003723
Pumo3g01177 617 CDD RRM3_I_PABPs 214 294 - -
Pumo3g01177 617 CDD RRM2_I_PABPs 122 197 IPR045305 -
Pumo3g01177 617 Gene3D - 32 125 IPR012677 -
Pumo3g01177 617 FunFam Polyadenylate-binding protein 205 301 - -
Pumo3g01177 617 FunFam Polyadenylate-binding protein 29 124 - -
Pumo3g01177 617 SMART rrm1_1 125 197 IPR000504 GO:0003723
Pumo3g01177 617 SMART rrm1_1 320 392 IPR000504 GO:0003723
Pumo3g01177 617 SMART rrm1_1 37 110 IPR000504 GO:0003723
Pumo3g01177 617 SMART rrm1_1 216 289 IPR000504 GO:0003723
Pumo3g01177 617 SUPERFAMILY RNA-binding domain, RBD 36 203 IPR035979 GO:0003676
Pumo3g01177 617 Gene3D - 301 405 IPR012677 -
Pumo3g01177 617 Gene3D - 560 599 - -
Pumo3g01177 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 293 IPR000504 GO:0003723
Pumo3g01177 617 SMART rrm2_1 216 288 IPR003954 GO:0003676
Pumo3g01177 617 SMART rrm2_1 125 197 IPR003954 GO:0003676
Pumo3g01177 617 SMART rrm2_1 320 392 IPR003954 GO:0003676
Pumo3g01177 617 SMART rrm2_1 37 110 IPR003954 GO:0003676
Pumo3g01177 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 396 IPR000504 GO:0003723
Pumo3g01177 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Pumo3g01177 617 Gene3D - 200 300 IPR012677 -
Pumo3g01177 617 FunFam Polyadenylate-binding protein 125 198 - -
Pumo3g01177 617 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 201 IPR000504 GO:0003723
Pumo3g01177 617 SUPERFAMILY PABC (PABP) domain 563 595 IPR036053 GO:0003723
Pumo3g01177 617 CDD RRM4_I_PABPs 318 396 - -
Pumo3g01177 617 SUPERFAMILY RNA-binding domain, RBD 214 400 IPR035979 GO:0003676
Pumo3g01177 617 FunFam Polyadenylate-binding protein 302 407 - -
Pumo3g01177 617 Gene3D - 126 198 IPR012677 -
Pumo3g01177 617 PANTHER RNA BINDING PROTEIN 35 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01177 Pumo-Chr3 19022678 19027659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01177 35 594 Eukaryotic Initiation Factors Gene Family AT1G71770 58.217 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01177 K13126 - gmx:100783163 1125.92