Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01150 ATGGATCCTCATACTGAAGAGTTGCCTCGGTACATACATATAAATCAGAATGAGATTTTTATGCGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAAAATGATGCCGATGACCCTGACAGTGCATGTGGGGATAGCTGCCTGAATGTATTAACCAGCACTGAATGCACCCCTGGTTATTGCCCTTGTGATATCTTATGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGTTGTTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGGATATTAAGGCAGGACAATTTGTCATCGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCCCAGGCTTATGAAAATCAAGGTCTTAAGGATGCATTTATCATTTGCCTTAATGCATCTGAATCTATTGATGCAACCAGGAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCGAACTGTGAGACGAGAAAATGGAACGTGTTGGGGGAAATAAGAGTTGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAATTAGCTTATGATTATAATTTTGAATGGTTTGGGGGTGCAAAGGTTCGTTGCCTTTGTGGTGCACTCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTATGGGAAGATGATGATGACAGGTACTCTGTTGAGAAAATTCCTGTATATGATTCTGCAGAGGATGATCCGGTGTCAAATGTTAATGGACGAACCGAACCCTCTTTGGATGTTATGGTTAAAGCTGAGCAATTATCAGAGTCCACTGCTTTCCATGTTCAGCCCCTTGATTCAGTTCAGATGAAAGGTTTAGATGTCAAGATTAAAACTGAGGTAGCAGATGAGGATATGAACATGTACTCGCAGGATACTGAACAGACCCTTTCACAAAAGAATGCAATGATATCACGTATCCGAAGCAATACTGCAGGCAGAAACTATCGCCTTGGACCTAGGTCCATGTCTACCAAAAGATCAAGGGCATATAATGGAAGGTTTAAAAATCTCGTAGAGAAGAAAATTGATGCAAAGTTTGCAGCTGCCCTCCTAGCATCCAAGGAAGCACAAGAAGAGATTTTAAATTGTGAGAAAATAAAGGATGATGCTACATCTGCTCTTGATTCCTTATACGATGAAATACGGCCTGCCATTGAGGAACACGAGAGGGATCGCCAAGACAGTGTATCCACCACTGTAGCAGAGAAGTGGATACAGGCTTGCTGCCTGAAGTTGAAGGCGGAGTTTGATCTTTACTCGTCAATTGTCAAAAATGTTGCTTGCAATGCGCAAAGGGCACCTGGCCAAGTAAAACCTACTGAAGTAAATAACGAAAACGAAATTAAGCTCTTGACAGGTTGA 1440 0.4083 MDPHTEELPRYIHINQNEIFMRRHKKQKEEDIAICECKNDADDPDSACGDSCLNVLTSTECTPGYCPCDILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDIKAGQFVIEYCGEVISWKEAKRRSQAYENQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDDPVSNVNGRTEPSLDVMVKAEQLSESTAFHVQPLDSVQMKGLDVKIKTEVADEDMNMYSQDTEQTLSQKNAMISRIRSNTAGRNYRLGPRSMSTKRSRAYNGRFKNLVEKKIDAKFAAALLASKEAQEEILNCEKIKDDATSALDSLYDEIRPAIEEHERDRQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACNAQRAPGQVKPTEVNNENEIKLLTG 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01150 479 FunFam Histone-lysine N-methyltransferase 1 235 - -
Pumo3g01150 479 SMART set_7 83 206 IPR001214 GO:0005515
Pumo3g01150 479 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0042054
Pumo3g01150 479 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Pumo3g01150 479 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0042054
Pumo3g01150 479 Pfam SET domain 94 200 IPR001214 GO:0005515
Pumo3g01150 479 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Pumo3g01150 479 PANTHER SET DOMAIN PROTEINS 7 452 - -
Pumo3g01150 479 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0042054
Pumo3g01150 479 SUPERFAMILY SET domain 9 220 IPR046341 -
Pumo3g01150 479 Gene3D SET domain 1 235 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01150 Pumo-Chr3 18672326 18679040 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01150 65 222 C2H2 Transcription Factor Family AT2G23740 34.831 2.91e-21 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo3g01150 SET 9.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01150 - - gmx:100804657 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01150 3 18672326 18679040 Pumo3g01150 3 18672326 18679040 ECH