Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01145 ATGCAAGGGAGTAGTACTACTGTAGGTTCGGTTCCGAGCCATGTGGTGTCGGCCTCTGCTGCTTCGGAGTGGGTCCCGGCAAGTGGTTTTCCCATGATGTCACGTTTTATGCATGCGCCTTCTCCGGCTTTGTCTTCTTCTCCTGGGCCTTTTCTTTTGGGCTCCTCGGTTGGCCACAAAAGAGCGCGTGAAGACGAGGCTGGCGCTGGTGCGAGTGAGGGTGTTGCAGCAGCAGCAGCAGCAGCTTCTTCTCAAATACAAACACAAGCTATTGAAAGTGCTTCGAATGAAGAAAGTGGGGAGAGGAGGAGGAGATACAGAGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGGACATTCGACACTGCGGAGGCTGCAGCGAGGGCTTACGATGAAGCCGCATTGAAGTTCAGAGGTAACAGAGCCAAACTCAATTTCCCAGAAAACGTTGCCGCGGTTCAACCTCCTCATCCGTTTCCCGATTTACCGGCAAGTGCGATTGCCGGTTCCGGTTCTGGATCAGTGGTGACAGGTTTTTCTCCAACGGTGATGCAGGGGGTCCCGTTTCAGGGCTCCTCTGATATGCTCAGAGACTATTGGGGGTATTCTCAGCTGCTGCGGAGTCCAGGGGACTTCCATGGACTCGACCAGTGGTTTTTCGATTCGCAAATGGCAGCGTTTCAATCTTCTTCGTCGTCGTTGTTACCGCCGCCACCACCGTCGTTTTCGCCTTCCTCTGCTTCGTTTCCTCTGTTTTCTTCTAGCCAGCAAATGGGAGTTTTCCGGCCTCCAGGAGAGCAGGCTCACGGCGGAGAAGACGGTGGTAGCGGGTCAGAGTTTTCAGAGCTTCCACCTTCGACGTGGTCAGATACCAGTGGCTATCCTCCTCCACCTGGTTGA 945 0.5513 MQGSSTTVGSVPSHVVSASAASEWVPASGFPMMSRFMHAPSPALSSSPGPFLLGSSVGHKRAREDEAGAGASEGVAAAAAAASSQIQTQAIESASNEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALKFRGNRAKLNFPENVAAVQPPHPFPDLPASAIAGSGSGSVVTGFSPTVMQGVPFQGSSDMLRDYWGYSQLLRSPGDFHGLDQWFFDSQMAAFQSSSSSLLPPPPPSFSPSSASFPLFSSSQQMGVFRPPGEQAHGGEDGGSGSEFSELPPSTWSDTSGYPPPPG 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01145 314 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
Pumo3g01145 314 PANTHER DNA-BINDING DOMAIN 74 206 IPR044808 GO:0003700|GO:0009873
Pumo3g01145 314 MobiDBLite consensus disorder prediction 81 95 - -
Pumo3g01145 314 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Pumo3g01145 314 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
Pumo3g01145 314 PRINTS Ethylene responsive element binding protein signature 128 144 IPR001471 GO:0003700|GO:0006355
Pumo3g01145 314 PRINTS Ethylene responsive element binding protein signature 106 117 IPR001471 GO:0003700|GO:0006355
Pumo3g01145 314 MobiDBLite consensus disorder prediction 37 107 - -
Pumo3g01145 314 SUPERFAMILY DNA-binding domain 105 163 IPR016177 GO:0003677
Pumo3g01145 314 CDD AP2 113 164 IPR001471 GO:0003700|GO:0006355
Pumo3g01145 314 FunFam Ethylene-responsive transcription factor 2 104 163 - -
Pumo3g01145 314 Gene3D AP2/ERF domain 104 164 IPR036955 GO:0003700|GO:0006355
Pumo3g01145 314 MobiDBLite consensus disorder prediction 261 276 - -
Pumo3g01145 314 MobiDBLite consensus disorder prediction 245 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01145 Pumo-Chr3 18618439 18620157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01145 84 175 AP2-EREBP Transcription Factor Family AT2G33710 65.217 4.96e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g01145 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01145 - - gmx:100802242 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02351 6 46399486 46402475 Pumo3g01145 3 18618439 18620157 PCT