Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01139 ATGGGAAGATCTCGGCCCTTGATTCCACCACTTCTTTTGTCTCAGCTTCGGGCACTTGCAGTTCCATCGAGGGTGTTGTATCGCATATACAACACCTATGGAACTGTTGGGCTGAGTGGGAAGACAGAGAAGAGTTGGAGGGTTAAGGCCTTAAGGGGAGAAGACAGTTACGGAACACTGGCTCAGCTTTGGGTTCGGGTGGAGGTTTTTGACTCTTTTGGTTCTTCTGAAGGCTACACATCTGCACCTTTTCATCCAGGAGATCTCATTCTTGGAACCGTCACCACAGAATCTCTTGTTAAGTTTGAGATGCGAATGTTGCTTGCTAGGTTTGATGGACATGCTGCGCCAGTAACTATCATATCTTTTTCTGAGAATGGATACTTCCTTGCGACTGCTGCTCATGATGGCGCTAAGCTTTGGGATCTACGTAAATTGAAGAACTTCAGGAATTTTGCTCCATATGATTTGGAAACTCCAATAAACTCCGTGGAGTTCGACCACAGTGGATCCTACCTAGCAATTGCTGGCTCTGATATGGTGAAGAAAGGGTTTGAGGGTTTCATTCTTCAATTACTAAGACGCTACTTGAACCTTTTCTTCTCAGGGAAGGCCAGGTGTGTAAAATTTGGTCCAGATTCTAAATACATAGCAGTTGCTCCCAATGAGTCATAA 675 0.4504 MGRSRPLIPPLLLSQLRALAVPSRVLYRIYNTYGTVGLSGKTEKSWRVKALRGEDSYGTLAQLWVRVEVFDSFGSSEGYTSAPFHPGDLILGTVTTESLVKFEMRMLLARFDGHAAPVTIISFSENGYFLATAAHDGAKLWDLRKLKNFRNFAPYDLETPINSVEFDHSGSYLAIAGSDMVKKGFEGFILQLLRRYLNLFFSGKARCVKFGPDSKYIAVAPNES 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01139 224 Pfam WD domain, G-beta repeat 108 137 IPR001680 GO:0005515
Pumo3g01139 224 ProSiteProfiles Trp-Asp (WD) repeats profile. 111 151 IPR001680 GO:0005515
Pumo3g01139 224 SMART WD40_4 145 186 IPR001680 GO:0005515
Pumo3g01139 224 SMART WD40_4 104 142 IPR001680 GO:0005515
Pumo3g01139 224 Gene3D - 20 224 IPR015943 GO:0005515
Pumo3g01139 224 PANTHER PRE-MRNA-PROCESSING FACTOR 19 74 220 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Pumo3g01139 224 SUPERFAMILY WD40 repeat-like 76 220 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01139 Pumo-Chr3 18448460 18454260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01139 68 219 U-box Gene Family AT1G04510 51.572 2.04e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01139 K10599 - gmx:100527039 202.986