Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01126 ATGTCCTTCCGCAGTATAGTTCGTGATGTAAGGGATGGATTTGGAAGCCTATCAAGGAGGAGTTTTGAGGTAAGGCTTCCTGGCCATCATAGGGGCAAGTCTCGCAGTTCGGTCCACGAGTTGGAGGATCAGCCATCGGTTATACAGAACAGCCGGTGGGCTAGCCTTCCTCCTGAGCTTCTTCACGATGTTATTAATAGATTGGAAGCAAGCGAGAGTACATGGCCTGGTCGTAAGCATGTGGTTGCTTGTGCTGCCGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCCTGAATTCTGCGGGAAGATTACTTTCCCTGTTTCCCTGAAGCAGCCTGGGCATAGGGATGGACCCATCCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCACCTCTTCCTTTGCCTTAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACCAGAAGAACAACTTGCACAGAGTATATTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGTACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAGTTTATAATTTATGATACACAACCTCCCTACAACAATGCTATGCTGTCTCCACCTGGCCGCAGCCGTAGGTTTTCGAAAAAGGTTTCTCCAAAGGTCCCTAGCGGCAGCTACAATATTGCCCAGGTCACCTATGAGTTGAATGTCCTTGGTACTAGGGGGCCACGAAGGATGAATTGCACAATGTACTCAATTCCTGCATCATCCATCGAGCCTAATGGCGTTGTCCCAGGCCAGCCAGAGCTCCTTCCCCGCGCCCTTGAGGATTCTTTCCGGAGTATATCCTTCTCAAAATCAATTGACAATTCAACCGAGTTTAGCAGCGCTAGGTTCTCAGACATAATGGGAACTGGCAATGAAGACGAGGAGGGAAAGGTGAGACCACTAGTTCTCAAGAACAAGTCTCCAAGGTGGCATGAACAGCTGCAATGTTGGTGCCTCAACTTTAGAGGAAGGGTCACTGTTGCCTCTGTCAAGAATTTTCAGCTGATTGCCGCGACACCGCCAGCAGCCAGTGCTCCAACCGGAACAGGACCTACACCATCTCAGCCAACACAGTCTTCTTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGACTATCGTTACCCCCTCTCTGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAG 1293 0.4718 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHRGKSRSSVHELEDQPSVIQNSRWASLPPELLHDVINRLEASESTWPGRKHVVACAAVCKSWREMCKEIVSSPEFCGKITFPVSLKQPGHRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAMLSPPGRSRRFSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMYSIPASSIEPNGVVPGQPELLPRALEDSFRSISFSKSIDNSTEFSSARFSDIMGTGNEDEEGKVRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATPPAASAPTGTGPTPSQPTQSSSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01126 430 SUPERFAMILY F-box domain 45 96 IPR036047 GO:0005515
Pumo3g01126 430 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Pumo3g01126 430 MobiDBLite consensus disorder prediction 365 387 - -
Pumo3g01126 430 Pfam F-box domain 53 100 IPR001810 GO:0005515
Pumo3g01126 430 FunFam Tubby-like F-box protein 48 101 - -
Pumo3g01126 430 Gene3D - 47 101 - -
Pumo3g01126 430 SUPERFAMILY Tubby C-terminal domain-like 102 430 IPR025659 -
Pumo3g01126 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Pumo3g01126 430 CDD F-box_AtTLP-like 53 97 - -
Pumo3g01126 430 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Pumo3g01126 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Pumo3g01126 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Pumo3g01126 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Pumo3g01126 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Pumo3g01126 430 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Pumo3g01126 430 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Pumo3g01126 430 FunFam Tubby-like F-box protein 110 430 - -
Pumo3g01126 430 Gene3D Tubby Protein; Chain A 110 430 IPR025659 -
Pumo3g01126 430 Pfam Tub family 114 425 IPR000007 -
Pumo3g01126 430 PANTHER TUBBY-RELATED 34 428 - -
Pumo3g01126 430 MobiDBLite consensus disorder prediction 372 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01126 Pumo-Chr3 18088188 18092287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01126 1 430 TUB Transcription Factor Family AT1G76900 69.063 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pumo3g01126 Tub 2.1e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01126 K19600 - gmx:100817532 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02391 6 47718975 47723865 Pumo3g01126 3 18088188 18092287 PCT