Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01125 ATGCAGCTTGGAGACACCACTGTGATGGAAACATCCTCTGGCGAGGCTGTGGCGGCGCATGACGGTGGCGAGGTGATTATGATGGATGCAAATTCCGGTGAAGAAGAGAACAAGAGGAAATTAGAAGAGGGTGGTGGAGAAGAAGAAGAAGGTGACAAGATCAACAACAACTCATTCGGTGGAAACAGATGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCTGATATGGATGCTGTATTTCGAGATTCAAGTCTTAAGGGTCCACTTTGGGAAGAAGTTGCAAGGAAACTATCAGAACTGGGTTACCACCGAAGCGCAAAGAAGTGCAAGGAGAAATTCGAGAATGTGTACAAGTACCACAAAAGAACCAAAGAGAGCAGAAGTGGGAAACAGGAGGGAAAAACCTACAAGTTTTTTGATCAATTACAAGCCCTTGAGAACCAATTCACAGTTTCTTACCCGCCAAAACCACAACCCACTTTGACAACAAACACAGTGGCATTACCACCCCCAACAAGGCCTAGTGACACAACAGCAATCTCTTATGTCACCACCACTGTTCCATCATCCACAAACCCTACAATCATATCTCCTTCGCCACCACCACCACCAACCAATGCCACCACCACAACCACCATCACCATCACTTCTCCAACAGTAGTAACCAACCCTAGAAACCCTCCACAACAACCCAACAACAACAACAATAACATCACATTTTCTTTGCCCAACATGAACAACCTCTTCTCCACCACTTCAACCTCTTCTTCCACGGCCTCGGATGAGGACTTGGAAGAGAAGTATCGGAAGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACGAGGCAAGTCTTGGCCAAGCAAGAGGAAATGCAAAAGAGGTTCTTGGAAGCCATTGACAAAAGGGAGAGGGAACACGTGGCACAACAAGAGGCTTGGAGGATCCAAGAAATGGCAAGAATCAATAAAGAACACGAACTTCTTGTCCAAGAAAGATCAACTGCAGCAGCGAAAAATGCAGCAGTTATTGCATTTTTGCAACAGTTATCTGGTCAGCACCAAAATTCCACAACACTAGCCGGTGCCAATTTCCTTCAACCACCACCACCTCCACCCCAAGTGTCACAAGTACAACCACCACCACAACAGGCACCATTGATCATGTCAAATAATAATAACAACATTGAAATTCAGAAAATGAATAATGGTCACAGTGTTGTTCCTGTTGCTACTACTACTGCTACTCCTACTGCTGTCGTTGCTGCTACTGCTATTACTACTACTCCTTCTTCATTGAGTTCTTTATCTTCTTCTAGGTGGCCAAAGACAGAAGTTCATGATTTGATAAGATTGAGGACGAGTCTTGAAGCCAAGTACCAAGAAAATGGACCAAAGGCTCCATTGTGGGAGGATATATCAGCGGGAATGTTGAGACTCGGGTACAACAGGAGTGCCAAGAGATGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTCAAGGAAAGCAACAAGCAAAGGCGTGAGGATAGTAAGACATGTCCCTATTTTCATGAACTTGAAGCTCTATACAAAGAAAAGAGCAAGACTCAGAACCCCTTTGGCGCTTCATTCCACAACATGAAGCCACATGAGATGATGGAGCCCTTGATGGTGCAACCGGAGCAGCAATGGAGACCTCCCTCTCAATACGAACAAGGTGCAGGTAAGGAGAATAATGAAATTGAATATGAAAGAAAAGAAAGAGAGGATTTGGAAGAGGGAGAAGATGATGAAGAAGAAGAGGATGAAAATGAAGAGGGAGATCTAGAGAGTGTGGAAGATGAAGGAGGTAGCCGTTATGAAATTGCGACAAATAAACTTTCTTCAGTGGACACCGTTGAATGA 1905 0.4467 MQLGDTTVMETSSGEAVAAHDGGEVIMMDANSGEEENKRKLEEGGGEEEEGDKINNNSFGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVARKLSELGYHRSAKKCKEKFENVYKYHKRTKESRSGKQEGKTYKFFDQLQALENQFTVSYPPKPQPTLTTNTVALPPPTRPSDTTAISYVTTTVPSSTNPTIISPSPPPPPTNATTTTTITITSPTVVTNPRNPPQQPNNNNNNITFSLPNMNNLFSTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKRFLEAIDKREREHVAQQEAWRIQEMARINKEHELLVQERSTAAAKNAAVIAFLQQLSGQHQNSTTLAGANFLQPPPPPPQVSQVQPPPQQAPLIMSNNNNNIEIQKMNNGHSVVPVATTTATPTAVVAATAITTTPSSLSSLSSSRWPKTEVHDLIRLRTSLEAKYQENGPKAPLWEDISAGMLRLGYNRSAKRCKEKWENINKYFKKVKESNKQRREDSKTCPYFHELEALYKEKSKTQNPFGASFHNMKPHEMMEPLMVQPEQQWRPPSQYEQGAGKENNEIEYERKEREDLEEGEDDEEEEDENEEGDLESVEDEGGSRYEIATNKLSSVDTVE 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01125 634 Pfam Myb/SANT-like DNA-binding domain 62 148 IPR044822 -
Pumo3g01125 634 Pfam Myb/SANT-like DNA-binding domain 442 529 IPR044822 -
Pumo3g01125 634 MobiDBLite consensus disorder prediction 190 209 - -
Pumo3g01125 634 PANTHER FI21293P1 33 580 - -
Pumo3g01125 634 MobiDBLite consensus disorder prediction 1 61 - -
Pumo3g01125 634 Gene3D - 444 505 - -
Pumo3g01125 634 Gene3D - 64 125 - -
Pumo3g01125 634 MobiDBLite consensus disorder prediction 562 634 - -
Pumo3g01125 634 SMART sant 440 502 IPR001005 -
Pumo3g01125 634 SMART sant 60 122 IPR001005 -
Pumo3g01125 634 MobiDBLite consensus disorder prediction 221 262 - -
Pumo3g01125 634 MobiDBLite consensus disorder prediction 589 612 - -
Pumo3g01125 634 FunFam Trihelix transcription factor GT-2 64 125 - -
Pumo3g01125 634 CDD GT1 443 507 - -
Pumo3g01125 634 Coils Coil 581 615 - -
Pumo3g01125 634 ProSiteProfiles Myb-like domain profile. 436 500 IPR001005 -
Pumo3g01125 634 CDD GT1 62 127 - -
Pumo3g01125 634 MobiDBLite consensus disorder prediction 155 178 - -
Pumo3g01125 634 MobiDBLite consensus disorder prediction 221 268 - -
Pumo3g01125 634 MobiDBLite consensus disorder prediction 31 54 - -
Pumo3g01125 634 MobiDBLite consensus disorder prediction 363 385 - -
Pumo3g01125 634 ProSiteProfiles Myb-like domain profile. 56 120 IPR001005 -
Pumo3g01125 634 MobiDBLite consensus disorder prediction 368 383 - -
Pumo3g01125 634 FunFam Trihelix transcription factor GT-2 444 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01125 Pumo-Chr3 18067384 18070761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01125 49 564 Trihelix Transcription Factor Family AT1G76880 47.191 9.16e-140 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo3g01125 Myb_DNA-bind_4 1.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01125 - - gmx:100799041 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02396 6 47946115 47946804 Pumo3g01125 3 18067384 18070761 PCT