Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01124 ATGCTCGGGGACTCAGCTGTGTTGGGAGCAGGAGGAGGAGGAAGTGGCGGCGGCGGAGGAGGAGGAGGAGGAGAAGGTGGTGGCTCCGGTGATGCAGTGGCGGCGGCGACCGTGACGCATGATGTGGTGGCGGCGACGAGCGGGAGCGGTGGCGGTGGGGGAGTTGGATCAAATTCGGGGGACGATGAAAGGGGTAGAATCGAAGAGGGTGAACGTAGCTTCGGCGGTAACCGGTGGCCGCGACAAGAGACTTTGGCCTTGTTAAGGATACGGTCGGATATGGACGTGGCGTTTCGAGATGCAAGTGTTAAGGGTCCCTTGTGGGAAGAAGTATCCAGGAAAATGGCAGAGCTTGGGTATCACAGAAGTTCCAAGAAGTGCAAAGAGAAATTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAAGGTCGAAGTGGGAAACAAGATGGCAAAACGTATCGTTTCTTTGATCAACTAGAAGCCCTTGAGAACCACACTCTATCACCCCATTCCCCAAACCCATCACCAAAACCACCTCAATCAGCACCATCAAGAGTAGTAGCAACAACAACAACAACTGCATCAGTGTCACTACCAATTGCAACAACAGCAACAACTGCATCATCAGTGTCACTACCAATTCCAACACCAACACCAACAGTGCCAATGCAGCCACTATTGTCCAACACCACTCTCACTAGTACTCTCCCCCATATCACTGTTCCATCAACAACACCACTCCCTATAACCATACCTCAACCCATTCTCACTACCCCATCAATAAACCTCACAATCCCTTCTTATCCTCCATCAAACCCTACAAATTTCCCACCACCATCATCAAACCCTACCACCAACACTACCCCACCAACCTCTTTCCCCACCGACACCTTCTCCAATTCCAGCTCCTCCTCCACCTCATCCGATGAAACATTGGAAGGTAGGCGCAAGAGGAAGCGCAAATGGAAGGACTTCTTCGAGCGACTAATGAAGGAAGTGATCGAGAAGCAAGAGGAGCTTCAAAAGAAGTTCTTGGAAGCCATAGAGAAACGCGAACACGACAGAATAGCAAGAGAAGAAGCATGGAGAGTCCAAGAAATGCAAAGAATCAATAGGGAAAGAGAAATCTTAGCACAAGAAAGATCCATAGCCGCAGCCAAAGACGCAGCTGTTATGTCATTCCTTCAAAAAATAGCCGAACAACAAAACCTCGGTCAAACATTGAGCAACATCAACCTCATACAACCACAATCACAACCACAACAACAACCGATACAACAAATGACACCACCTATTGTTGCAGCACCACCTCCCGTGCAACAACCACCATCCGTGGTTGTTACACAGTCTGTGATGCTGCCAGTGGTGTCACAAGTGACGAATATGGAGATAGTGAAAGCCAATAATAACAACAACAACAATAACAATGATGAGAATTTTGTGCCACCGAGTTCTTCTAGGTGGCCAAAAGTGGAGGTTCAGGCGTTGATAAAGCTTCGAACGAACATGGATGAGAAGTATCAAGAGAATGGACCAAAGGGTCCTCTCTGGGAGGAGATCTCAGGCTCAATGAGGAAGCTCGGGTACAACCGAAACGCCAAGAGGTGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTCAAGGAAAGCAACAAGCGGAGACCGGAAGATTCCAAAACGTGCCCTTATTTCCACCAGCTGGAAGCGCTGTACAGGCAGAAGCACAAGGCGGAGAGCCCGGCGGCGGCGGCGGTGAAGCCGGAGAGCACGGTGGCGCCGTTGATGGTGCAGCCGGAGCAGCAATGGCCACCTCAGCAGCAGGATAGGGACATCACAATGGAAGACATGGAGAACGAAGATGATGAATACGAAGAAGAGAGGGAAGGAGAAGAAGAAGAAGATGATGAAGAAGGTGGTGGCGGTGGGAACTATGAGATAGTGGCAAACAAAACAAGTGGTGCTGCATCAGTGAGTGCGTCAGTGGGGGCTTCAACGGAGTAA 2013 0.4978 MLGDSAVLGAGGGGSGGGGGGGGGEGGGSGDAVAAATVTHDVVAATSGSGGGGGVGSNSGDDERGRIEEGERSFGGNRWPRQETLALLRIRSDMDVAFRDASVKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKQDGKTYRFFDQLEALENHTLSPHSPNPSPKPPQSAPSRVVATTTTTASVSLPIATTATTASSVSLPIPTPTPTVPMQPLLSNTTLTSTLPHITVPSTTPLPITIPQPILTTPSINLTIPSYPPSNPTNFPPPSSNPTTNTTPPTSFPTDTFSNSSSSSTSSDETLEGRRKRKRKWKDFFERLMKEVIEKQEELQKKFLEAIEKREHDRIAREEAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQQNLGQTLSNINLIQPQSQPQQQPIQQMTPPIVAAPPPVQQPPSVVVTQSVMLPVVSQVTNMEIVKANNNNNNNNNDENFVPPSSSRWPKVEVQALIKLRTNMDEKYQENGPKGPLWEEISGSMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLEALYRQKHKAESPAAAAVKPESTVAPLMVQPEQQWPPQQQDRDITMEDMENEDDEYEEEREGEEEEDDEEGGGGGNYEIVANKTSGAASVSASVGASTE 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01124 670 MobiDBLite consensus disorder prediction 263 319 - -
Pumo3g01124 670 ProSiteProfiles Myb-like domain profile. 77 135 IPR001005 -
Pumo3g01124 670 Gene3D - 489 550 - -
Pumo3g01124 670 Gene3D - 79 140 - -
Pumo3g01124 670 FunFam Trihelix transcription factor GT-2 489 550 - -
Pumo3g01124 670 MobiDBLite consensus disorder prediction 617 644 - -
Pumo3g01124 670 MobiDBLite consensus disorder prediction 653 670 - -
Pumo3g01124 670 FunFam Trihelix transcription factor GT-2 79 140 - -
Pumo3g01124 670 Coils Coil 617 637 - -
Pumo3g01124 670 MobiDBLite consensus disorder prediction 468 484 - -
Pumo3g01124 670 ProSiteProfiles Myb-like domain profile. 487 545 IPR001005 -
Pumo3g01124 670 MobiDBLite consensus disorder prediction 271 286 - -
Pumo3g01124 670 Pfam Myb/SANT-like DNA-binding domain 77 163 IPR044822 -
Pumo3g01124 670 Pfam Myb/SANT-like DNA-binding domain 487 574 IPR044822 -
Pumo3g01124 670 SMART sant 75 137 IPR001005 -
Pumo3g01124 670 SMART sant 485 547 IPR001005 -
Pumo3g01124 670 CDD GT1 77 142 - -
Pumo3g01124 670 MobiDBLite consensus disorder prediction 1 78 - -
Pumo3g01124 670 CDD GT1 487 552 - -
Pumo3g01124 670 MobiDBLite consensus disorder prediction 468 487 - -
Pumo3g01124 670 MobiDBLite consensus disorder prediction 166 191 - -
Pumo3g01124 670 MobiDBLite consensus disorder prediction 599 670 - -
Pumo3g01124 670 MobiDBLite consensus disorder prediction 61 76 - -
Pumo3g01124 670 MobiDBLite consensus disorder prediction 287 310 - -
Pumo3g01124 670 PANTHER FI21293P1 47 630 - -
Pumo3g01124 670 Coils Coil 324 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01124 Pumo-Chr3 18042337 18045919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01124 75 605 Trihelix Transcription Factor Family AT1G76890 49.156 1.98e-153 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo3g01124 Myb_DNA-bind_4 1.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01124 - - gmx:100817001 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02397 6 47983341 47987029 Pumo3g01124 3 18042337 18045919 PCT