Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01117 ATGGGGAAGAAGAAGCCGACGGCGAGGGACGAAGAGAACGCGTCGCAGCAAGGAGGCGGCGGGAAATCGAAGAAGAAGGCGGTGGTCATCGATGACGATGAGTATTCCATCGGAACGGAGCTCTCCGAGGAGCCAGCGCCGGAGGAGAAACCCGCTGCGGCGGGAAATAAGAAAGGTAAGAAAGGTAATGCTAAAGCTAAGAGTAATGATGATGATGATGATGTTGATGAGGATGAGGATGTGCCTGAAGTTGTGTTTGCTGGGAAGAAGAAGGGGAAAAGTAAGAAAGGTGGTGGGAGCAGTGGGTTCACTGCATCTGGCTTTGGTTTGCTTGGTGATGAGGGAGATGACGATGAAGAGAAATCTGGGTTAACCGGTGAGGTTGATGGTGAGGAAGAGGATGAGCCTGTGGTTAGTTTTTCGGGGAAGAAGAAGGCATCGAAGAAAGGTGGTAGTTTGTTCTCTGCATCTGCTTTTGATGCAATTGATGATGATGAGGGTGGTGAGGAGGAGGATGAGCCAGTGATTAGTTTTTCTGGCAAGAAGAAGTCCTCGAAGGGTTCAAAGAAAGGCAGGGGCAGTTTGTTCTCTGCCTCGGCTTTTGATGCTATTGATGATGATGAGGATGGTGAGGTGGTGGATGATAAGAATGACAATGTTGATGATGATGAGCCTGTTATTGCTTTCACTGGGAAGAAGAAGTCTTCGAAAGGGGGTAAGAAGGGTGGTTCTGTGTTTTCAGCTGCTGCTCTCACTGAGATTGATGATGGGGAGGAGAATAAGGATGATGGTGGTGGTGATGATGATGATGACATTGGACCGATCACTTTCTCTGGTAAGAAAAAGAAGTCTTCCAAAAAGGCTGCTAGCAAAGGTGCTTCTGTTGAGGATGATGTTTCTGTATCTGAGTCTGGTAAGGATGGTGATGACAAGGATGAGGATGATGTTTCTTTAGTTGCGTTTTCAGGTAAAAAGAAGTCTTCTAAAAAGAAGGGCAGTAGTACTGCTGCCAAAGGGAGTGGTGAAAATGTGGATGTAGTGGAGCCTGAGGAACCCAGTGTTGGTAGTACTGATGCTGGGAACAGCAATGTAAATAAGAGTGAAGAGGTTGCTGGAACTTCCAAAAACAAAAAGAAGAATAAGAAGAAGAGTGGAAGAACTGCTCAAGAGGAGGAAGATTTGGACAAACTTCTTGCAGAGCTTGGTGAGGCCCCTCCTGTACCAAAACCCACAACTCCGCCCCAGGATGATAAAGTTCAGCCTACTCCTGAAGTAGTACCTGTTGCTGATGCTTCAGGGGAAAAGGAGGGTGAGGAGGAGACTGTAGAGACAGCTGCTGCAAAGAAGAAGAAGAAGAAAAAGGAAAAGGAAAAGGAGAAGAAGGCAGCTGCAGCGGCAGCAGCAGCAGGAGCTGCACCAGAAAATGAAACAGCAGAAGTTAAAGCTGAGGTAATTGAACCAAAGAAGAATGATTCAAAGGCTAAAAAAGCAGCTGATAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCACTAGCTCGAAGACAAGAGGCTGAAGAAAGAAAGAAAAGAGAAGAGGAGGAAAGGTTAAGGAAGGAGGAAGAGGAGCGACGTAGGCAAGAGGAACTTGAGAGACAAGCAGAAGAGGCTAGACGTAGAAAGAAGGAAAGAGAAAAGGAGAAACTCCAGAAAAAAAAGCAAGAAGGTAAACTGTTAACTGGTAAGCAGAAGGAAGAAGCCCGCCGTCTGGAGGCAATGAGGAGGCAGATTCTCAATAACACAGGGGGTATGACTCTCTCTGCTGGGGACTCTGGTGCTCCAGCCAAAAAACCCATATATCAGACGAAGAAGGGAAAATCAAATAACCGTAATCAGAATGGTGCTGCTGCTGCTCAGACAGCTGAAAGTGTTGAAGCAAAGGAGACTGTTACTGATGTAGCTTCAGAGGAACCAGAAAAGATTGAAGAAGTGGAGTTGATCCAGGTGGATGACAAAGTTGAACTTCCTGTAGCTGTTGAAGAGGATGGAGCAGAAGATGATGATGAGGATGAATGGGATGCAAAAAGCTGGGATGATGTTAATCTGAATGCCAAAGGCGCATTTGCTGATGAAGAGGCTGACTCAGAGCCTAAACCTATCGTCAAAAAGGAGATTAAAAATGCCGTACCTACTCAGAATGCTGGTGCTACTAATAAAACTGTTTCTAAGCCTGTGGCTGAAGAAATTGAAAATGGAAAGCAGGCTAATACTGTGGTTGTGGACAAAAGTAAAAAGCATGATCCTGACTTGAATAGGAAAAAGTCTGCTGTGCCTCCTAAGCCTAGTGATGAGAATCTCCGCTCCCCAATTTGCTGTATCATGGGGCATGTGGATACTGGGAAAACCAAGCTTCTGGATTGTATTCGAGGCACTAATGTTCAGGAGGGTGAGGCTGGCGGCATCACACAACAGATTGGTGCTACATACTTTCCTGCTGAGAACATACGTGATAGAACGAAGGAACTGAAAGCTGATGCAAAGCTGAAAGTTCCCGGTCTACTGGTTATTGATACCCCAGGGCACGAGTCATTTACTAACTTGAGGTCTCGGGGTTCAGGTCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGGTTAGAGCAACAAACAATAGAATCACTAAATCTATTAAAAATGAGGAATACAGAATTCATTGTTGCCTTGAATAAGGTTGACAGGCTTTATGGGTGGAAAACATGTCGCAATGCTCCAATTGTTAAAGCAATGAAGCAGCAGACTAAGGATGTTCAAAATGAGTTTAATATGAGGCTCACTCAGATTGTTACTGAATTCAAAGAACAAGGGCTGAATACTGAGTTGTATTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGTGAAGGAATTCCCGATTTGTTATTACTATTGGTTCAATGGACGCAAAAAACAATGGTTGAGAAACTTACATACAGTGAAGAAGTGCAGTGTACTGTTTTAGAGGTGAAGGTAGTTGAAGGCCATGGAACTACTATAGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGAGAACAAATAGTTGTCTGCGGAATGCAGGGTCCAATTGTTACCACAATTCGAGCTTTATTGACACCCCATCCAATGAAGGAACTTCGTGTCAAGGGAACATATCTTCATCACAAAGAAATCAAAGCTGCAATGGGTATAAAAATCACTGCCCAGGGCCTTGAACATGCCATTGCTGGCACTGGTTTATATGTGGTGAAGCCTGATGATGATTTGGAAGATGTTAAAGAATCAGCCATGGAAGATATGCGGTCAGTCATGAGCAGGATTGACAGGACTGGTGAAGGTGTTTGTGTACAGGCTTCTACCCTTGGTTCCTTGGAAGCATTACTGGAGTTTTTGAAAACTCCAGAAGTGAGTATCCCAGTTAGTGGTATAAGCATAGGCCCTGTACATAAAAAGGATGTAATGAAGGCCAGTGTAATGCTTGAAAAAAAGCGAGAGTATGCAGCTATATTGGCATTTGATGTCAAAGTCACTCCTGAGGCTAGGGAACTGGCAGATGAATTGGGCGTGAAGATATTTATTGCTGATATCATTTATCATCTGTTTGACCAATTTAAAGCTTATATTGACAACATTAAGGAGGAGAAAAAGAGAGAAGCTGCTGATGAGGCAGTCTTCCCATGTGTTATGCAAATCTTACCAAATTGCATTTTCAACAAGAAGGACCCAATTGTTTTGGGAGTTGATATCCTTGAAGGCATTTTAAAGATTGGGACTCCAATTTGCATTCCTTCTAGAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAGAATAACCATAAACCTGTTGATTATGCAAAGAAGGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATTCTGAAGAGCAACAAAAAATGTTCGGGAGGCATTTTGAGATTGATGATGAACTTGTAAGCCATATTTCACGGAGATCTATTGATATACTCAAAGCTAATTATCGGGATGAACTATCTATGGAGGAATGGAGGTTGCTTGTGAAATTGAAGAATCTTTTCAAGATACAATGA 4119 0.4341 MGKKKPTARDEENASQQGGGGKSKKKAVVIDDDEYSIGTELSEEPAPEEKPAAAGNKKGKKGNAKAKSNDDDDDVDEDEDVPEVVFAGKKKGKSKKGGGSSGFTASGFGLLGDEGDDDEEKSGLTGEVDGEEEDEPVVSFSGKKKASKKGGSLFSASAFDAIDDDEGGEEEDEPVISFSGKKKSSKGSKKGRGSLFSASAFDAIDDDEDGEVVDDKNDNVDDDEPVIAFTGKKKSSKGGKKGGSVFSAAALTEIDDGEENKDDGGGDDDDDIGPITFSGKKKKSSKKAASKGASVEDDVSVSESGKDGDDKDEDDVSLVAFSGKKKSSKKKGSSTAAKGSGENVDVVEPEEPSVGSTDAGNSNVNKSEEVAGTSKNKKKNKKKSGRTAQEEEDLDKLLAELGEAPPVPKPTTPPQDDKVQPTPEVVPVADASGEKEGEEETVETAAAKKKKKKKEKEKEKKAAAAAAAAGAAPENETAEVKAEVIEPKKNDSKAKKAADKKVPKHVREMQEALARRQEAEERKKREEEERLRKEEEERRRQEELERQAEEARRRKKEREKEKLQKKKQEGKLLTGKQKEEARRLEAMRRQILNNTGGMTLSAGDSGAPAKKPIYQTKKGKSNNRNQNGAAAAQTAESVEAKETVTDVASEEPEKIEEVELIQVDDKVELPVAVEEDGAEDDDEDEWDAKSWDDVNLNAKGAFADEEADSEPKPIVKKEIKNAVPTQNAGATNKTVSKPVAEEIENGKQANTVVVDKSKKHDPDLNRKKSAVPPKPSDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRDRTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEQQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNAPIVKAMKQQTKDVQNEFNMRLTQIVTEFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTYSEEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGEQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDVKESAMEDMRSVMSRIDRTGEGVCVQASTLGSLEALLEFLKTPEVSIPVSGISIGPVHKKDVMKASVMLEKKREYAAILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKREAADEAVFPCVMQILPNCIFNKKDPIVLGVDILEGILKIGTPICIPSREFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELVSHISRRSIDILKANYRDELSMEEWRLLVKLKNLFKIQ 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01117 1372 Coils Coil 502 573 - -
Pumo3g01117 1372 MobiDBLite consensus disorder prediction 753 774 - -
Pumo3g01117 1372 Gene3D - 1124 1228 IPR036925 -
Pumo3g01117 1372 MobiDBLite consensus disorder prediction 674 693 - -
Pumo3g01117 1372 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1105 1234 IPR036925 -
Pumo3g01117 1372 Gene3D Translation factors 1235 1372 - -
Pumo3g01117 1372 MobiDBLite consensus disorder prediction 643 657 - -
Pumo3g01117 1372 SUPERFAMILY Translation proteins 1239 1371 IPR009000 -
Pumo3g01117 1372 PRINTS GTP-binding elongation factor signature 848 858 IPR000795 GO:0003924|GO:0005525
Pumo3g01117 1372 PRINTS GTP-binding elongation factor signature 784 797 IPR000795 GO:0003924|GO:0005525
Pumo3g01117 1372 PRINTS GTP-binding elongation factor signature 864 875 IPR000795 GO:0003924|GO:0005525
Pumo3g01117 1372 PRINTS GTP-binding elongation factor signature 900 909 IPR000795 GO:0003924|GO:0005525
Pumo3g01117 1372 FunFam Eukaryotic translation initiation factor 5B 1122 1228 - -
Pumo3g01117 1372 MobiDBLite consensus disorder prediction 355 370 - -
Pumo3g01117 1372 MobiDBLite consensus disorder prediction 256 270 - -
Pumo3g01117 1372 NCBIfam small GTP-binding protein domain 785 910 IPR005225 GO:0005525
Pumo3g01117 1372 MobiDBLite consensus disorder prediction 384 399 - -
Pumo3g01117 1372 CDD IF2_eIF5B 783 993 - -
Pumo3g01117 1372 MobiDBLite consensus disorder prediction 727 779 - -
Pumo3g01117 1372 MobiDBLite consensus disorder prediction 202 221 - -
Pumo3g01117 1372 MobiDBLite consensus disorder prediction 112 135 - -
Pumo3g01117 1372 MobiDBLite consensus disorder prediction 1 657 - -
Pumo3g01117 1372 MobiDBLite consensus disorder prediction 431 450 - -
Pumo3g01117 1372 FunFam eukaryotic translation initiation factor 5B 1003 1122 - -
Pumo3g01117 1372 Pfam Translation-initiation factor 2 1108 1221 IPR023115 -
Pumo3g01117 1372 Gene3D Translation factors 1003 1123 - -
Pumo3g01117 1372 Pfam Elongation factor Tu GTP binding domain 784 992 IPR000795 GO:0003924|GO:0005525
Pumo3g01117 1372 MobiDBLite consensus disorder prediction 616 633 - -
Pumo3g01117 1372 MobiDBLite consensus disorder prediction 479 587 - -
Pumo3g01117 1372 Pfam Elongation factor Tu domain 2 1019 1094 IPR004161 GO:0005525
Pumo3g01117 1372 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 780 996 IPR000795 GO:0003924|GO:0005525
Pumo3g01117 1372 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 474 1368 IPR015760 -
Pumo3g01117 1372 CDD IF2_aeIF5B_IV 1243 1338 - -
Pumo3g01117 1372 MobiDBLite consensus disorder prediction 300 320 - -
Pumo3g01117 1372 FunFam Eukaryotic translation initiation factor 5B 1235 1372 - -
Pumo3g01117 1372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 780 1071 IPR027417 -
Pumo3g01117 1372 Coils Coil 435 467 - -
Pumo3g01117 1372 CDD aeIF5B_II 1004 1114 - -
Pumo3g01117 1372 MobiDBLite consensus disorder prediction 674 689 - -
Pumo3g01117 1372 FunFam Eukaryotic translation initiation factor 5B 774 1002 - -
Pumo3g01117 1372 Gene3D - 774 1002 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01117 Pumo-Chr3 17954035 17963164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01117 1 229 Eukaryotic Initiation Factors Gene Family AT1G76810 40.079 1.19e-06 51.6