Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01113 ATGGCAATGGCTTTCATTCCAGCAGTTCATGCCACGGAACTGTTGCCAACGGTTGTCAGGGGTACTAAGCTCACTAAAAAATATGATAAGCAGATAGATATTCAAGAGAATCTTGCTATCACCCAGTGCAGTGGCGAGACACAAGCCAATTTAGCTTCAGTTATTGCTCAATACGTGGAGACTCTAAATCAGTACAGCTTGCGCAACTTGGGCTATCCTACTAATCAGGACTTCAACTATGATGCAATAAAACCATTACTTCGTTTTCACCTAAACAATGCTGGTGATCCATTTCTAGGGAGCAGCTTCTCCCTAAATTCAACAACTTTTGAAGTTTGTGTGCTTAATTGGTTTGCAAATTTGTGGGAGATAAAGAAAAATGAGTATTGGGGATATGTCACAACTGGTGGAACTGAAGGCAATCTTCACGGAATTTTAGTAGGGAGAGAACAACTTCCGGATGGGATATTGTATACCTCACAAGATTCACATTATTCAATCTTCAAAATAGCTAGAATGTATCGAATGAAGTGCGTGAAGGTTAGCACATTAACCTCCGGTGAGATTGATTGTGTTGATCTGAAGGATTTAGTTCTTGCACACAAGGACAAGCCAGCCATTATCAATTTAAACATAGGGACGACTATGAAAGGAGCTATTGATGACCTTGATCTTGTAATACAAACGCTTAAGGAATGTGGTTTCACTCGTGATCGATTCTACATCCATTGTGATGGAGCTCTATTTGGAATGATGTTGCCTTTCGTCGAACGAGCACCAAAGATTACCTTCAAAAAACCTATTGGAAGTGTAACTATTTCTGGCCACAAGTTCTTGGGATGCCCAATGCCTTGTGGTGTTGTAATAACTCGTTTAGAATACATCAATGCATTGTCCAAAGATGTTGAAATTATTGCTTCAAGGGATGCCACAATCACAGGTAGCCGTTGTGGGCATGCTCCAATATTTCTTTGGTATGCCTTGAAAAAGAGAGGTTTAATAGGATTCCAAAACGAAGTGCAAAAATGCATAATGAAAGCACAATATTTACAAAATCGACTACGTGATGCTGGAATTGGTACAATGTTAAACAAGTTTAGCAACATTGTCATATTTGAGAGGCCTCTAGATCATGACTTTACCTGTAGGTGGAATTTGGCATGCAATGGGAATATTGCACATGTGGTGGTGATGCAACACATTACCATTGAAATGTTGGACTCCTTTGTTGGTGAATTTCGTCAAAAACGATCCATTTGGTTCGAAGATAGACAGTTTCAACCTCTGTGTATTGCAAATGACATTGGTTCTAGAAATTGTGCTTGTTCAAAGCATTGTTCAATATCATGA 1350 0.3933 MAMAFIPAVHATELLPTVVRGTKLTKKYDKQIDIQENLAITQCSGETQANLASVIAQYVETLNQYSLRNLGYPTNQDFNYDAIKPLLRFHLNNAGDPFLGSSFSLNSTTFEVCVLNWFANLWEIKKNEYWGYVTTGGTEGNLHGILVGREQLPDGILYTSQDSHYSIFKIARMYRMKCVKVSTLTSGEIDCVDLKDLVLAHKDKPAIINLNIGTTMKGAIDDLDLVIQTLKECGFTRDRFYIHCDGALFGMMLPFVERAPKITFKKPIGSVTISGHKFLGCPMPCGVVITRLEYINALSKDVEIIASRDATITGSRCGHAPIFLWYALKKRGLIGFQNEVQKCIMKAQYLQNRLRDAGIGTMLNKFSNIVIFERPLDHDFTCRWNLACNGNIAHVVVMQHITIEMLDSFVGEFRQKRSIWFEDRQFQPLCIANDIGSRNCACSKHCSIS 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01113 449 PANTHER - 29 445 - -
Pumo3g01113 449 Gene3D Aspartate Aminotransferase, domain 1 329 417 IPR015422 GO:0003824
Pumo3g01113 449 Gene3D - 86 328 IPR015421 GO:0003824
Pumo3g01113 449 Pfam Pyridoxal-dependent decarboxylase conserved domain 107 358 IPR002129 GO:0016830|GO:0019752|GO:0030170
Pumo3g01113 449 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 270 291 IPR021115 GO:0016831
Pumo3g01113 449 SUPERFAMILY PLP-dependent transferases 68 415 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01113 Pumo-Chr3 17884455 17887402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01113 212 380 Calmodulin-binding Proteins AT1G65960 24.457 1.14e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01113 K25193 - gmx:100781665 756.903