Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01100 ATGAATAGAACCGATGGCACTTTGCCTGGAAGCTATGGAGCTAATCTTTACCAGCAAAGCCGAGGATCTATAACCTCTAATGGGACGGATGATTACCCAGACGTTAAATTGCCAAACGGCGGCGGCATGATTCAGTCAAGCAGCAGTACTGTGTCTGTGTCTGTGTCGGATACTGTTGATGGTAGGGATTCTGGAAATTTCCAAGATGATGAGAGTGGTTTGGGATCAAGGAATGCTATAGTGCCTGCTAATAGTAATCAAATTGAGGCAGAATGGATCGAACAATATGAACCTGGTGTCTATATAACACTCGTTGCCCTGCGTGATGGAACAAGAGATCTGAAGCGAGTGCGGTTCAGCCGGCGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCGGAGAACCGCGATAGGGTATACGAAAGGTACAATGTTCGAAGCACGGACAAGTCTTCCGGCCAAGCGGCACGTAGAGCAGATGGTGCTGGTTCACCTGTTTTATAA 507 0.4773 MNRTDGTLPGSYGANLYQQSRGSITSNGTDDYPDVKLPNGGGMIQSSSSTVSVSVSDTVDGRDSGNFQDDESGLGSRNAIVPANSNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDRVYERYNVRSTDKSSGQAARRADGAGSPVL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01100 168 ProSiteProfiles BRX domain profile. 90 145 IPR013591 -
Pumo3g01100 168 MobiDBLite consensus disorder prediction 148 168 - -
Pumo3g01100 168 MobiDBLite consensus disorder prediction 41 62 - -
Pumo3g01100 168 Pfam Transcription factor regulating root and shoot growth via Pin3 89 144 IPR013591 -
Pumo3g01100 168 PANTHER PROTEIN BREVIS RADIX-LIKE 1 51 144 IPR044532 -
Pumo3g01100 168 MobiDBLite consensus disorder prediction 1 32 - -
Pumo3g01100 168 MobiDBLite consensus disorder prediction 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01100 Pumo-Chr3 17678405 17679228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01100 91 161 Major Intrinsic Protein MIP AT1G31880 47.887 7.86e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01100 - - gmx:100783270 292.352