Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01099 ATGGCTTCTACAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATACCTGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACCAATGTTAGTCATTGGATACCGAAGAGAATTGCAGGTCCACTAGAGGGGCTTCAAGTTGCTTTTGTCACTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACTGGGCAGCTCTTTACATTTGGTGATGGAACATTTGGTGTCCTGGGCCATGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTAGAGTCCTTGTCTGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTCGTAGAGGTTATTGTGACACAATCAAGTGCTAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGATAAAAATCGCCTTGGACATGGAGATAAGGACGCCCGGCTTGAACCAACTTGTGTACCTTCACTAATTGATTACAATTTTCATAGAATTGCTTGCGGGCACAGTTTAACGGTAGGCCTGACAACATCTGGACATGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAGCTGCCGTGTTTGGTTGAAGACAAGCTTGCAGGTGAATCTGTTGAAGAAATTGCATGCGGGGCATATCATGTTGCTGTTTTAACATCCAAAAATGAAGTTTACACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGAGATGTTGAGGATCGAAAATCACCAACTTTGGTTGAAGCCTTGAAAGATAGGCATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCCGCCATTTGCCTTCATAAGTGGGTATCCGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAACTGTTATAATTGTGGACTTGTGCACTGCCATTCATGTAGTTCTAGGAAAGCATTAAGAGCTGCCCTGGCTCCTAATCCTGGGAAGCCATATCGTGTATGTGATTCTTGTTTCATAAAATTGAACAAGGTTGCAGAATCGGGCAATAATAATCGGAGGAATGCTATGCCTCGTTTGTCGGGTGAAAACAAGGACAGATTAGAGAAGTCTGAGCTACGATTGACCAAGACAGCAGTCCCTTCTAATATGGATTTGATAAAGCAACTAGATACTAAGGCAGCCAAACAGGGGAAGAAGGCTGATACATTCTCTCTGGTTCGCACCTCACAACCACAATCTTTGCTACAGCTCAAAGATGTGGTCTTGTCTACTGCTATTGATTTTAAGCGAACAGCTCCAAGACCTGTTCTGACACCATCTGGAGTGAGTTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCAAGTCCCCCTCGTTCAGCTACACCTATTCCAACAACATCGGGACTTTCCTTCTCAAAAAGTATTGCTGATAGTTTGAAGAAAACAAATGAACTTTTGAATCAAGAAGTGTTGAAGTTACGTGCTCAGGTTGAGACCCTGAGACAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCATCAAAAAAGACTCAGGAGGCTATGGCACTGGCTGCTGAGGAATCTGCCAAATCTAAGGCTGCAAAAGAAGTTATAAAGTCACTCACAGCACAGCTCAAAGATCTGGCTGAGAGGCTTCCTCCCGGCGCTTATGATGCTGAAAACATCAGACCAGCTTACCTGCCAAATGGTCTGGAGTCAAATGGCATCCATTATCCAGACTTAAATGGGGAGCGTCACACCAGGGCCTGA 1836 0.4493 MASTTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTNVSHWIPKRIAGPLEGLQVAFVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKDARLEPTCVPSLIDYNFHRIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPQSDGKLPCLVEDKLAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKSPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFIKLNKVAESGNNNRRNAMPRLSGENKDRLEKSELRLTKTAVPSNMDLIKQLDTKAAKQGKKADTFSLVRTSQPQSLLQLKDVVLSTAIDFKRTAPRPVLTPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVLKLRAQVETLRQRCELQELELQRSSKKTQEAMALAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGAYDAENIRPAYLPNGLESNGIHYPDLNGERHTRA 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01099 611 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 4 566 - -
Pumo3g01099 611 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 78 129 IPR000408 -
Pumo3g01099 611 Pfam Transcription factor BRX N-terminal domain 548 583 IPR027988 -
Pumo3g01099 611 Pfam Regulator of chromosome condensation (RCC1) repeat 140 187 IPR000408 -
Pumo3g01099 611 Pfam Regulator of chromosome condensation (RCC1) repeat 192 241 IPR000408 -
Pumo3g01099 611 Pfam Regulator of chromosome condensation (RCC1) repeat 78 126 IPR000408 -
Pumo3g01099 611 Pfam Regulator of chromosome condensation (RCC1) repeat 246 293 IPR000408 -
Pumo3g01099 611 Pfam Regulator of chromosome condensation (RCC1) repeat 23 74 IPR000408 -
Pumo3g01099 611 Coils Coil 497 538 - -
Pumo3g01099 611 SMART fyve_4 295 364 IPR000306 GO:0046872
Pumo3g01099 611 FunFam PH, RCC1 and FYVE domains-containing protein 1 130 302 - -
Pumo3g01099 611 Coils Coil 553 573 - -
Pumo3g01099 611 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 64 74 IPR000408 -
Pumo3g01099 611 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 193 244 IPR000408 -
Pumo3g01099 611 SUPERFAMILY RCC1/BLIP-II 5 298 IPR009091 -
Pumo3g01099 611 MobiDBLite consensus disorder prediction 454 488 - -
Pumo3g01099 611 MobiDBLite consensus disorder prediction 458 475 - -
Pumo3g01099 611 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 301 363 IPR017455 -
Pumo3g01099 611 Gene3D - 1 128 IPR009091 -
Pumo3g01099 611 Gene3D - 129 307 IPR009091 -
Pumo3g01099 611 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 23 77 IPR000408 -
Pumo3g01099 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 369 IPR013083 -
Pumo3g01099 611 SUPERFAMILY FYVE/PHD zinc finger 297 370 IPR011011 -
Pumo3g01099 611 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 141 192 IPR000408 -
Pumo3g01099 611 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 296 IPR000408 -
Pumo3g01099 611 MobiDBLite consensus disorder prediction 590 611 - -
Pumo3g01099 611 FunFam Putative E3 ubiquitin-protein ligase HERC1 303 371 - -
Pumo3g01099 611 PRINTS Chromosome condensation regulator RCC1 signature 24 40 IPR000408 -
Pumo3g01099 611 PRINTS Chromosome condensation regulator RCC1 signature 80 96 IPR000408 -
Pumo3g01099 611 PRINTS Chromosome condensation regulator RCC1 signature 141 157 IPR000408 -
Pumo3g01099 611 PRINTS Chromosome condensation regulator RCC1 signature 179 195 IPR000408 -
Pumo3g01099 611 PRINTS Chromosome condensation regulator RCC1 signature 195 209 IPR000408 -
Pumo3g01099 611 PRINTS Chromosome condensation regulator RCC1 signature 61 74 IPR000408 -
Pumo3g01099 611 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 116 126 IPR000408 -
Pumo3g01099 611 Pfam FYVE zinc finger 297 363 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01099 Pumo-Chr3 17675831 17678355 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01099 - - gmx:100811999 1129.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02442 6 50913990 50924744 Pumo3g01099 3 17675831 17678355 PCT