Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01096 ATGCCTTGTCCCTCTCTCACACCACTCTTCTTCTTCTTCTTCCTCTTCACCCTCCCCTCCGTTCTTTCTCTCCCTTTCTTCCCTTCCGACAACCTCACCCTCTACGGTGACGCCTTCTTCACCCACAACGCCATCACCCTCACCACCCAACACTCCACATGCTCCTCTTCCATTGGAAGAGCCTTCTTCATCTACCCGGTCCGTTTTCTTGACCCCCAAACCAACTCCACCGCTTCCTTCTCCTGCCGCTTCTCCTTCTCCATCCTCTCCTCCCCCTCTTGCCCCTCCGCCGACGGCCTCGCCTTCCTCGTCGCCTCCTCCACCCACTTCCCCACCCTCTCCACCGGCTACATGGGCCTCCCTTCCCCCCAAGACTCTTCCTCCTCCTCCTCCTCCTTCTTCGCCGTCGAATTCGACACCGCCTTCGACCCCTCCCTTGGCGACATCAACGACAACCACATCGCCGTTGATGTCAACAGCGTCTCCTCTTTCGCCTCCGTCGATGCCTTGTCCCGCGGCATTGACCTCAAGAGTGGAAAGATTATCACTGCATGGGTGGAGTATAGGCATGCAATGAAAATGGTACGTGTGTGGGTTGGTTATTCTTCCACTAGGCCCCCAACTCCGATTCTTGCTACCCAAATAGACCTTTCTGAGAGACTTGAGGACTTCATGCACGTTGGTTTCACTGCCTCCAATGGGGAGGGGTCGAGTGTTCACCTTGTTCATCATTGGCAGTTCAAGACTTTTGGCTATGACTCTCACTCCATGGATGTGGTGGAAGAAGGAGATTGTTTCTTGTGTTATGAAGGGGATTCAACGAGTGAAAGTTCAATCATGTCAAATAAGGACAATGAGAAGAAGAAAAAGATTGGGGAAATGGCTCTTGGGTTGGGAGGGTTGACGGCGTTTCTGGTGTCAGGTGTGGCGGCAATGGTTGTGGTGTGTGTTTTCTTGACAAAGAAGAAAGGTGGTGTTAGGAAGAATAGGGAACAAGGGCAAAGTTGTAGGTTTCAGACGAGTAAAGTGCCAACTAGGTTGTCACTTTCGGAGATTAAGTCTGCCACAATGGGGTTCAATCGGGATAGGCTTGTTGGGGAGGGTGCATCTGCCAAGGTGTATAAAGGGTATCTTCCCTTTGGAGGGGATGTGGCAGTGAAGAGATTTGAGAGGGATAACGGTTTGGACTGTTTGCACAACCCTTTTGCCACTGAGTTTGCCACCATGGTGGGTTACTTGCGGCACAAGAATTTGGTTCAGCTTAAGGGGTGGTGTTGTGAGGGGAATGAGTTGGTCCTGGTTTATGAGTTCCTCCCCAATGGGAGCCTCAATAAGGTTTTGCATAGAAACTTCAATTCTTCCATTGTTCTTTCGTGGCAACAAAGGGTGAATGTTGTTCTGGGGGTTGCTTCTGCTCTTACCTACCTTCATGAAGAGTGTGAGAGGCAGATCATTCATAGGGATGTGAAGACCTGCAATATAATGCTTGATGCGGATTTCAATGCCAAGTTAGGGGATTTTGGGCTAGCGGAAGTGTATGAGCATAGTTCTAGCACGAGGGATGCTACTATACCAGCAGGGACAATGGGGTATCTTGCTCCTGAATATGTTTATTCTGGTGTTCCTACTGTGAAGACTGATGTGTACAGCTTTGGGGTGGTGGTGTTGGAAGTGGCAACTGGGAGGAAGCCTGTGGAGGATGATGGCACCGTGGTTGCGGATTATGTGTGGAGCTTAGTTTTCCACATTAACACTGTTGCCTCCAACACAGGGAAAGCAAAATTCGAATCAAAGGCAAAGAGTGTGGAGCGGAGCGTCGTTGTTTAG 1827 0.5047 MPCPSLTPLFFFFFLFTLPSVLSLPFFPSDNLTLYGDAFFTHNAITLTTQHSTCSSSIGRAFFIYPVRFLDPQTNSTASFSCRFSFSILSSPSCPSADGLAFLVASSTHFPTLSTGYMGLPSPQDSSSSSSSFFAVEFDTAFDPSLGDINDNHIAVDVNSVSSFASVDALSRGIDLKSGKIITAWVEYRHAMKMVRVWVGYSSTRPPTPILATQIDLSERLEDFMHVGFTASNGEGSSVHLVHHWQFKTFGYDSHSMDVVEEGDCFLCYEGDSTSESSIMSNKDNEKKKKIGEMALGLGGLTAFLVSGVAAMVVVCVFLTKKKGGVRKNREQGQSCRFQTSKVPTRLSLSEIKSATMGFNRDRLVGEGASAKVYKGYLPFGGDVAVKRFERDNGLDCLHNPFATEFATMVGYLRHKNLVQLKGWCCEGNELVLVYEFLPNGSLNKVLHRNFNSSIVLSWQQRVNVVLGVASALTYLHEECERQIIHRDVKTCNIMLDADFNAKLGDFGLAEVYEHSSSTRDATIPAGTMGYLAPEYVYSGVPTVKTDVYSFGVVVLEVATGRKPVEDDGTVVADYVWSLVFHINTVASNTGKAKFESKAKSVERSVVV 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01096 608 Gene3D - 21 262 - -
Pumo3g01096 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Pumo3g01096 608 Pfam Protein kinase domain 360 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01096 608 SUPERFAMILY Protein kinase-like (PK-like) 336 570 IPR011009 -
Pumo3g01096 608 FunFam L-type lectin-domain containing receptor kinase S.6 16 263 - -
Pumo3g01096 608 SMART serkin_6 359 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01096 608 Pfam Legume lectin domain 28 250 IPR001220 GO:0030246
Pumo3g01096 608 PANTHER - 41 592 - -
Pumo3g01096 608 CDD lectin_legume_LecRK_Arcelin_ConA 29 251 IPR001220 GO:0030246
Pumo3g01096 608 SUPERFAMILY Concanavalin A-like lectins/glucanases 12 250 IPR013320 -
Pumo3g01096 608 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Pumo3g01096 608 ProSiteProfiles Protein kinase domain profile. 359 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01096 608 FunFam Lectin-domain containing receptor kinase A4.3 438 608 - -
Pumo3g01096 608 FunFam L-type lectin-domain containing receptor kinase S.6 323 437 - -
Pumo3g01096 608 Gene3D Transferase(Phosphotransferase) domain 1 438 602 - -
Pumo3g01096 608 Gene3D Phosphorylase Kinase; domain 1 320 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01096 Pumo-Chr3 17652112 17658503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01096 28 578 Receptor kinase-like Gene Family AT5G42120 55.846 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Pumo3g01096 Pkinase 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01096 - - gmx:100783805 959.518