Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01092 ATGAATTATGTGACTGTGGATTCTTATAGAATTGGTGAATTTTCCTATTGGTTTCACCAGACTTGGACTACTAGCTTACAACTATGTATCTCATTAGTTATACTTTTTCGTGCTGTTGGATTGGCAACAATTGCCTCCTTAGTGGTGATAGTAATCACTGTGCTTTGCAATACTCCAATTGCAAAGTTACAGCACAAGTTTCAAAGCAAACTTATGGTGACACAAGATCAGAGATTGAAGGCTTGTTCTGAGGCTCTTGTGAATATGAAGGTGTTGAAGTTGTATGCGTGGGAAACCAATTTTAGAAGTGCTATAGAGAGATTAAGGAATGAAGAGCTCAAATGGTTGTCTGCAGTGCAATTAAGAAAGGCATACAACACCTTTCTCTTTTGGTCCTCCCCTGTTTTGGTCTCTGCTGCTTCCTTTGGGGCATGTTACTTTCTTAATGTTCCTTTACATGCAAATAATGTTTTCACTTTTGTCGCAACTTTGCGCCTTGTTCAAGATCCAATTAGAATCATCCCTGATGTTATTGGGGTGGTTATTCAGGCAAAAGTGGCGTTTACTCAGATTGTAAAATTTCTGGAGGCACCTGAACTGCAGAGTGCAAATATCACACAAAGACCAGGGCAAAAGGTGGCTATCTGTGGAGAGGTTGGCTCAGGCAAATCAACTCTCTTAGCAGTAATTCTCAGAGAAGTTCCTAATACTCAGGGGACAATTGAAGTTTATGGGAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAGACAGGTACAATAAGGGAGAATATATTGTTTGGGGCAGCTATGGATGCTGAAAAATATCAAGCAACACTTGATAGGTCTTCACTATTGAAGGACCTTGAGTTGTTTCCCCATGGTGATCTCACTGAAATAGGGGAGAGAGGAGTCAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAAGTTGCACGTGCACTATATCAGAGTGCTGATATATATCTCTTAGATGATCCATTCAGTGCTGTTGATGCACATACTGCAACAAATTTGTTTAATGAATACATAATGGAAGGAGTCGCTGGGAAAACAGTCTTGCTCGTGACTCATCAAGTTGACTTCCTTCCATCATTTGATTCTGTTTTGTTAATGTCAGATGGGGAAATCATAGAAGCTGCTCCTTATCACCATTTGTTGAGCTCAAGCCAAGAATTTCAGGACCTTGTGAATGCCCACAAAGAGACTGCTGGTTCTGACCGGCATGTGGATGTTACTTCTTCGCAGAAACATTCAAATAGTGCTAGAGAAATCAGAAAAATATCTACCGAGCAGCATTATGAAGCATCAAAAGGTAATCAATTGCTTAAGCAAGAAGAGAGAGAAAAAGGAGACCGAGGGTTCAAACCGTATATACAGTATCTGAATCAGAGCAAAGGATATATATACTTCTCTGTGGCTGCTCTTTCTCACCTACTATTTGTGGTTGGCCAAATATTACAAAACTCATGGATGGCCGCTAGTGTTGACAATCCTCAAGTCAGCACATTTCAATTGATTCTTGTTTACTTGTTGATTGGAGTTATTTCAACAGTATTTTTGTTGATGAGAAGTCTTTTTGCAGTTGCTTCAGGCTTTGAATCATCAAAGTCTGTATTTTTACAGCTACTGAACTCCCTTTTTCATGCCCCCATGTCATTTTATGACTCCACTCCTTTAGGACGGATACTTAGTAGGGTCTCCTCAGATCTCAGCATTGTGGAGCTTGATGTCACAGTCGGCCTTATGGTTGCTGTGGGAGCGACTATGAATTGCTATTCTAATCTAACCGTTTTAGCTGTTGTTACTTGGCAAGTCTTGTTTGTCTCCATACCAATGATTTATTTTGCAATCCGCCTGCAGAGATATTACTTTGCCTCTGCAAAAGAACTGATGAGGATGAATGGCACAACAAAATCCTTTGTTGCTAACCATCTTGCTGAATCTGTTGCTGGAGCTGTGACAATAAGGGCTTTTGAGGAGGAAGATCGTTTTTGTGAGAAAAATCTTGATCTAATTGACGTCAATGCGAGTCCTTACTTCCATAGTTTTACAGCGAATGTGTGGTTGATTCAACGATTAGAAACAGGGAGTGCTGTTGTTCTTGCATCTGCGGCACTGTGCATGGTTGTACTTCCACGTGGAACTTTCTCCTCTGGATTTATTGGCATGGCTCTCTCCTATGGCCTTTCACTTAACATCTCCTTAGTAAATTCAATTCAAAATCAATGCAGCATAGCGAATTATATAATATCAGTGGAGAGGCTAAATCAGTATATGCATATGCCAAGTGAGGCTCCAGAAGTAATAGAAGGAAATCGTCCTCCTGTGAATTGGCCAGTTGCTGGTAGAGTACAAATAAATGAATTGCAGATACGTTACAGGCCTGATGCACCACTAGTACTTCGTGGAATCACATGCACGTTTGAAGGAGGGCACAAAATTGGTATTGTTGGCCGCACAGGCAGTGGGAAGTCCACTCTTATAGGTGCTTTATTCCGTCTAGTGGAGCCAGCAGCTGGAAAAATCATTGTTGATGACATTGACATTTGTTCCATTGGCCTCCATGATTTGAGGTCGCGTTTTGGTATTATACCTCAGGATCCTACTCTTTTTAATAGGACAGTCAGATACAATTTGGACCCCTTATCTGAACACTCTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCAAGAGGCTGTCCAGGAGAAAAAAGAGCGATTAGACTCTTCAGTTGTTGAAGCTGGAGCAAACTGGAGCATGGGACAACGGCAGCTATTCTGCTTGGGGCGTGCTCTTCTCAGGAGAAGTCGGATATTGGTGCTTGATGAAGCAACTGCGTCAATTGAAAATGCAACTGATTTGATTTTGCAGAAAACCATTAGGACCGAGTTTGCAGATTGTACAGTGATCACAGTAGCTCACAGGATACCAACTGTGATGGATTGCACCAAGGTTCTTGCCATCAGTGATGGGAAACTGGTGGAGTATGATGAGCCAATGAAGTTGATAAAGAGAGAAGGATCGCTGTTTGGGAAGCTTGTCAACGAATACTGGTCTCATTTTCAGTCTGCGAATCTCATTGAAAGTTGA 3120 0.4154 MNYVTVDSYRIGEFSYWFHQTWTTSLQLCISLVILFRAVGLATIASLVVIVITVLCNTPIAKLQHKFQSKLMVTQDQRLKACSEALVNMKVLKLYAWETNFRSAIERLRNEELKWLSAVQLRKAYNTFLFWSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQDPIRIIPDVIGVVIQAKVAFTQIVKFLEAPELQSANITQRPGQKVAICGEVGSGKSTLLAVILREVPNTQGTIEVYGKFAYVSQTAWIQTGTIRENILFGAAMDAEKYQATLDRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQVARALYQSADIYLLDDPFSAVDAHTATNLFNEYIMEGVAGKTVLLVTHQVDFLPSFDSVLLMSDGEIIEAAPYHHLLSSSQEFQDLVNAHKETAGSDRHVDVTSSQKHSNSAREIRKISTEQHYEASKGNQLLKQEEREKGDRGFKPYIQYLNQSKGYIYFSVAALSHLLFVVGQILQNSWMAASVDNPQVSTFQLILVYLLIGVISTVFLLMRSLFAVASGFESSKSVFLQLLNSLFHAPMSFYDSTPLGRILSRVSSDLSIVELDVTVGLMVAVGATMNCYSNLTVLAVVTWQVLFVSIPMIYFAIRLQRYYFASAKELMRMNGTTKSFVANHLAESVAGAVTIRAFEEEDRFCEKNLDLIDVNASPYFHSFTANVWLIQRLETGSAVVLASAALCMVVLPRGTFSSGFIGMALSYGLSLNISLVNSIQNQCSIANYIISVERLNQYMHMPSEAPEVIEGNRPPVNWPVAGRVQINELQIRYRPDAPLVLRGITCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAAGKIIVDDIDICSIGLHDLRSRFGIIPQDPTLFNRTVRYNLDPLSEHSDQEIWEVLGKCQLQEAVQEKKERLDSSVVEAGANWSMGQRQLFCLGRALLRRSRILVLDEATASIENATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLAISDGKLVEYDEPMKLIKREGSLFGKLVNEYWSHFQSANLIES 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01092 1039 CDD ABC_6TM_ABCC_D2 473 766 IPR044726 GO:0140359
Pumo3g01092 1039 Gene3D - 195 436 IPR027417 -
Pumo3g01092 1039 Gene3D ABC transporter type 1, transmembrane domain 1 194 IPR036640 GO:0005524|GO:0016020
Pumo3g01092 1039 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 181 405 IPR003439 GO:0005524
Pumo3g01092 1039 Pfam ABC transporter 808 956 IPR003439 GO:0005524
Pumo3g01092 1039 SUPERFAMILY ABC transporter transmembrane region 467 771 IPR036640 GO:0005524|GO:0016020
Pumo3g01092 1039 CDD ABCC_MRP_domain1 197 382 - -
Pumo3g01092 1039 Gene3D - 775 1026 IPR027417 -
Pumo3g01092 1039 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1025 - -
Pumo3g01092 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 781 1018 IPR027417 -
Pumo3g01092 1039 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 487 754 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g01092 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 405 IPR027417 -
Pumo3g01092 1039 FunFam ABC transporter C family member 10 1 199 - -
Pumo3g01092 1039 Gene3D ABC transporter type 1, transmembrane domain 439 772 IPR036640 GO:0005524|GO:0016020
Pumo3g01092 1039 FunFam ABC transporter C family member 3 774 1026 - -
Pumo3g01092 1039 FunFam ABC transporter C family member 5 440 772 - -
Pumo3g01092 1039 Pfam ABC transporter transmembrane region 475 729 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g01092 1039 Pfam ABC transporter transmembrane region 1 168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g01092 1039 CDD ABC_6TM_ABCC_D1 1 188 IPR044746 GO:0140359
Pumo3g01092 1039 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 791 1025 IPR003439 GO:0005524
Pumo3g01092 1039 ProSitePatterns ABC transporters family signature. 307 321 IPR017871 GO:0005524|GO:0016887
Pumo3g01092 1039 SUPERFAMILY ABC transporter transmembrane region 1 199 IPR036640 GO:0005524|GO:0016020
Pumo3g01092 1039 CDD ABCC_MRP_domain2 789 1009 - -
Pumo3g01092 1039 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 183 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g01092 1039 FunFam Multidrug resistance-associated protein 4 179 423 - -
Pumo3g01092 1039 SMART AAA_5 209 382 IPR003593 GO:0016887
Pumo3g01092 1039 SMART AAA_5 817 1009 IPR003593 GO:0016887
Pumo3g01092 1039 Pfam ABC transporter 201 334 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01092 Pumo-Chr3 17440745 17484392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01092 198 395 Calmodulin-binding Proteins AT2G36910 33.333 5.93e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01092 K05666 - gmx:100811468 1871.67