Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01086 ATGGATATGCCGAAGAACCGCCCCACTCGAACAACGTCTCTCAGGGACGCCACCGACTCTTATAAGATGGAAGGCACTGGTAGCTGGGACGCCCTCGAATGGACCAAGATTGAGCCAATTACGCGCTTCGTCTCGCACGCCAATCTTGATTTCTTATTCGAGGCGGAGCAAGTTGTAGCTGAAGGACATGGTGTTGTTCTTGTTAATACAGATGATGCTGGCACGCTGATGGTAACAAATTTCCGTCTTATTTTTCTGAGTGAGGGAACTAGAAAAGTTATTGCCCTTGGAACAATACCACTAGCAACCATTGAGAAGTTTAACAAGACAGTTGTAAAGGTTCAGTCAAATACTCGTTATGTAGACAAGACACCAGCACCGAGACTGCTCCAGGTGATTGGAAAAGATATGAGAATTATAGTCTTCAGTTTCAGGCCACTTACAAAACAGAGACGCGTGGTATTTGATGCACTACTGAGGTGTACAAAGCCAACAAGATTATGGGATCTTTATGCTTTCGCAGCAGGACCTTCTAGGTTTAGGAACACTACTCCACTGGTGCGTTTACTGGATGAATATTTTCGACTTCTTTGCCTAGGTTCTTATCGTGCATCAGTCAATATAATTGAAAATGAGTCCTTCACCTTGTCAAATGACCTATGGAGAATAAGTAGCGTGAATTCCAATTATAGAATGTGCCAGAGTTATCCATTTGCTTTGGTTGTTCCAAAGATCATTAGTGATGATGAAGTGCTCCAGGCTTGCAGCTTCCGTGCAAGATGTCGACTGCCTGTAATTTCATGGTGCCATCCTTTGACTGGAGCAGTTGTTGCACGATCTTCTCAACCCTTAGTTGGACTTATGATGAACATGAGGAGCAACATGGATGAAAAACTCGTGGCTGCGCTCTGCAGCAAACTAGATAATGGCTCAAGAAGAAAGTTATATATTGTTGATGCACGGCCAAGAAAAAATGCATTGGCTAATGGAGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCTGAGGTAGTCTTTTTGGGGATAGACAACATCCATGCGATGAGAGAGAGCTTTGTTCGGCTCCGAGAATACATGGACACTCATGGCAGAACGTCATCGGATGGAATGTCTTCTTTTTTGAGACAAGGTGGGTCAACGTGGGGTGGTGGCAATCTAAGTAGTATGTCTGCTTCAGTATCAACCCTTGGGGACAGTGGATGGTTACTGCATGTTCAGAATGTGTTGGCTGGAGCAGCTTGGATTGCTGCTCGTGTTGCAATGGAAAACGCTTCTGTTCTTGTGCATTGCAGTGATGGATGGGATAGGACAAGCCAGTTGGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCACAGGGTTTCAGGCACTCGTTGAAAAAGACTGGCTTGCTTTTGGTCATCCATTTTCTGATCGGGTGGGGATGCCATCTGTCTCTGGAACTGGCACCGTGCCTTTCGAGTTATCTAGGCAGTCTTCAACTGGCAATTTCCCACCATCACCCATGCGCCAGTCATCAGGAACATTCTCATCGCAACCTCCAGCTTCATCTCACTCACATAACTCCAACAACTATTCTCCCATTTTTTTGCAGTGGGTTGACTGTGTTTCACAATTATTGCGGATGTATCCTTTTGCTTTTGAGTTCTCTGCGGCTTTCCTGGTGGACTTCATAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAGTGAGAGGGAGAGGCAGCAATGCAATGTTTTTGAGGCATGTGGATGTCTGTGGGTATACTTGGCTGATTTGCGGACATCATCAGGAGGTTCCCATGTGCATTACAATCCCTTTTATGATCCACTGAAGCATAATGGTCCTCTCCTGCCCCCAGCAGCAGCATTAGCCCCTACTTTGTGGCCCCAATTCCACCTTCGTTGGGCATGCCCAGAAGAAGCACAAGCTGGGGAGATTGAAGCACAATGCAGGAAGTTAGTTATGAAATACGCTGAGATGCAGAAGGCTAAAGAAATGGCAGAAAGGAAAGCTAAAGAAGTTACAAATTCCATGGAGTCGTTGAATGTAGAATTACGACATGAGAAGCAGCTAAACAGCTCAGCTATGAACATGGCCAAGAGTATGAGCAAAGAAAATATAGCCATAAAGCGTGCAATTCAGTCAATGGGGTGCAAGGTTCATGTCTCTGGTAGTAATGGTGAATGCACTGTTGACATTGAAAGCAACCCAGACATTGTGTGTTGTTCCTCTAGGAAAGAACCAAATAGTAATGTGCGTGATGACAAAAAGGATGTACTGAATACAGCAGATGATGATGATGGAAACAATGTGATTGGTCGGGTATGTGAAACTCTCTGCCCATTTCGCTCTGGAGATGGAGGCTGCAGGTGGCCAAATGGTGGTTGTGCTCAACTACGTAGCCAGTATGTTGGCCTGAAGGCAAATTTTGATGCATTTGACCAACTGACAATTGATGATAGTTATTTCAAGTCTAAGTGA 2535 0.4462 MDMPKNRPTRTTSLRDATDSYKMEGTGSWDALEWTKIEPITRFVSHANLDFLFEAEQVVAEGHGVVLVNTDDAGTLMVTNFRLIFLSEGTRKVIALGTIPLATIEKFNKTVVKVQSNTRYVDKTPAPRLLQVIGKDMRIIVFSFRPLTKQRRVVFDALLRCTKPTRLWDLYAFAAGPSRFRNTTPLVRLLDEYFRLLCLGSYRASVNIIENESFTLSNDLWRISSVNSNYRMCQSYPFALVVPKIISDDEVLQACSFRARCRLPVISWCHPLTGAVVARSSQPLVGLMMNMRSNMDEKLVAALCSKLDNGSRRKLYIVDARPRKNALANGAMGGGSESSSNYFQSEVVFLGIDNIHAMRESFVRLREYMDTHGRTSSDGMSSFLRQGGSTWGGGNLSSMSASVSTLGDSGWLLHVQNVLAGAAWIAARVAMENASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFTGFQALVEKDWLAFGHPFSDRVGMPSVSGTGTVPFELSRQSSTGNFPPSPMRQSSGTFSSQPPASSHSHNSNNYSPIFLQWVDCVSQLLRMYPFAFEFSAAFLVDFIDCMLSCRFGNFLCNSERERQQCNVFEACGCLWVYLADLRTSSGGSHVHYNPFYDPLKHNGPLLPPAAALAPTLWPQFHLRWACPEEAQAGEIEAQCRKLVMKYAEMQKAKEMAERKAKEVTNSMESLNVELRHEKQLNSSAMNMAKSMSKENIAIKRAIQSMGCKVHVSGSNGECTVDIESNPDIVCCSSRKEPNSNVRDDKKDVLNTADDDDGNNVIGRVCETLCPFRSGDGGCRWPNGGCAQLRSQYVGLKANFDAFDQLTIDDSYFKSK 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01086 844 Pfam Myotubularin-like phosphatase domain 171 592 IPR010569 -
Pumo3g01086 844 MobiDBLite consensus disorder prediction 504 535 - -
Pumo3g01086 844 ProSitePatterns Tyrosine specific protein phosphatases active site. 438 448 IPR016130 GO:0016311|GO:0016791
Pumo3g01086 844 Coils Coil 668 702 - -
Pumo3g01086 844 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 208 654 IPR029021 -
Pumo3g01086 844 ProSiteProfiles Myotubularin phosphatase domain. 201 650 IPR010569 -
Pumo3g01086 844 SMART gram2001c 41 111 IPR004182 -
Pumo3g01086 844 Gene3D - 63 162 IPR011993 -
Pumo3g01086 844 CDD PTP-MTM-like 261 552 - -
Pumo3g01086 844 PANTHER MYOTUBULARIN-RELATED 27 753 IPR030564 -
Pumo3g01086 844 SUPERFAMILY PH domain-like 52 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01086 Pumo-Chr3 17330698 17346471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01086 1 844 Protein tyrosine phosphatase (PTP) family AT3G10550 67.882 0.0 1149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01086 K18081 - gmx:100781842 1554.27