Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01068 ATGGCAGGTTTTTGGAGCGTGTTTTGTGGTGAATCTGGTTGTTCAGAGGCTGGAAGAATGCCTTACAGTTATGATTTTAGGCTTCTCATTGATCCTTCCGCTTGTGTCAACCATTTGTTGATCTCTTGCTTTGATGTATTGCTGCTTATCATGCTTCTAGTTTCTGCCATAGCCAACGGTGCTATTGGGTTGGCACTTTTGTGCTTTGGCACTTGGGTTTTAGAGCAAAGGTTGAGGAAAGCCCAAACTGCGTTGCCTCTTAATTGGTGGTTGCTAGAAATCTTTCATGAATTAACATGGTTGTTAGTGAGTTTAACAATCAGTCTTAACTTGAAACAACTTCCAAGAGCATGGTCAAGGCTTTTTTCTATTCTAATATTCCTGGTTTCTGGTTTCTTCTGTGCTTCATCATTGTTTTATGCAATTAGTAGCAGAGAACTATCCCTTAAGATAGCTTCAGATATTCTATCTTTTCTGGGGGCAATATTATTGTTATTATTCGCATATAAGGAATCCAAGCATAAGGGCACAGACAGAGAAATTGATGAAAGTCTTTATGCCCCGTTAAACGGTGAGTCCAACAAAAATGATTCTATCAGATATGTAACCCCATTTGTGAAAACTGGATTCTTCGGCAGAATGTCATTTTGGTGGTTGAATTCATTGATGAAAATGGGCAAAGAGAAAACACTTCAGGATGAAAACATTCCAAGGTTACGGGAGGAGGATCGAGCAGAAAGTTGTTATTTGCTGTTTCTGGATCAATTGAACAGACAGAAACAGAAGGATCAATCATTGCAGCCATCAGTTTTGAGGACAATAGTTTTATGCCATTGGAAAGAAATTTTAATATCAGGATTCTTTGCATTGCTTAACGTAGTTGCTGTGTCTTCAGGACCTCTTCTTCTGAATTCTTTTATATTGGTTGCTGAGGGTAACGAGGGTTTCAAATATGAAGCTTTTGTGTTGGCCATATCACTTTTCTTTACAAAAAACATAGAATCCTTATCACAAAGGCAATGGTACTTCCGCTGCAGACTTATTGGTCTAAAAGTTAGGTCATTGCTAACTGCAGCCATTTATAGGAAACAATTGAGGTTATCCAATTCTGCTAGATTGATGCACTCTGGTGGTCAGATAATGAATTATGTGACTGTGGATTCTTATAGAATTGGTGAATTTTCCTATTGGTTTCACCAGACTTGGACTACTAGCTTACAACTATGTATCTCATTAGTTATACTTTTTCGTGCTGTTGGATTGGCAACAATTGCCTCCTTAGTGGTGATAGTAATCACTGTGCGTTGCAATACTCCAATTGCAAAGTTACAGCACAAAAGTGCTATAGAGAGATTAAGGAATGAGGAGCTCAAATGGTTGTCTGCAGTGCAATTAAGAAAGGTATACAACACCTTTCTCTTTTGGTCCTCCCCCGTTTTGGTCTCTGCTGCTTCATTTGGGGCATGTTACTTTCTTAATGTTCCTTTACATGCAAATAATGTTTTCACTTTTGTCGCAACTTTGCGCCTTGTTCAAGATCCAATTAGAACCATCCCTGATGTTATTGGGGTGGTTATTCAGGCAAAAGTGGCGTTTACTCGGATTGTAAAATTCCTGGAGGCACCTGAACTGCAGAGTGCAAATATCACACAAAGACCAGGGCAAAAGGTGGCTATCTGTGGAGAGGTTGGCTCAGGCAAACCAACTCTCTTAGCAGTAATTCTCAGAGTAGTTCCTACTACTCAGGGGACAATTGAAGTTTATGGGAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAGACAGGTACAATAAGGGAGAATATATTGTTTGGGGCAGCTATGGATGCTGAAAAATATCAAGCAACACTTGATAGGTCTTCACTATTGAAGGACCTTGAGTTGTTTCCCCATGGTGATCTCACTGAAATAGGGGAGAGAGGAGTCAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAAGTTGCGCGTGCACTATATCAGAGTGCTGATATATATCTCTTAGATGATCCATTCAGTGCTGTTGATGCACATACTGCAACAAATTTGTTTAATGAATACATAATGGAAGGACTGGCTGGGAAAACAGGGTTGCTCGTGACTCATCAAGTTGACTTCCTTCCAGCATTTGATTCTGTTTTGATAATGTCAGATGGCCAAGAATTTCGGGACCTTGTGAATGCCCACAAAGAGACTGCTGGTTCTGACCAGCATGTGGATGTTACTTCTTCGCAGAAACATTCAAATAGTGATAGAGAAATCAGAAAAAAATCTACCGAGCAGCATTATGAAGCATCAAAAGGTGATCAATTGATTAAGCAAGAAGAGAGAGAGAAAGGAGATCGAGGGTTCAAACCGTATATACAATATCTGAATCAGAGCAAAGGATATATATACTTCTCTGTGGCTGCTCTTTCTCACCTACTATTTGTGGTTGGCCAAATATTACAAAACTCATGGATGGCCGCTAGTGTTGACAATCCTCAACTACTGAACTCCCTTTTTCGTGCCCCCATGTCATTTTTTGACTCCACTTCTTTAGGACGGATACTTAGTAGGGTCTCCTCAGATCTCAGCATTGTGGACCTTGATGTCGCAATGGGCCTTATGGTTGCTGTGGGAGCTACTATGAATTGCTATTCTAATCTAACCGTTTTAGCTGTTGTTACTTGGCAAGTCTTGTTTGTCTCCATACCAATGATTTATTTTGCAATCCGCCTGCAGAGATATTACTTTGCCTCTGCAAAAGAACTGATGCGGATGAATGGCACAACAAAATCCTTTGTTGCTAACCATCTTGCTGAATCAGTTGCTGGAGCTGTGACAATAAGGGCTTTTGAGGAGGAAGATCGTTTTTGTGAGAAAAATCTTGATCTAATTGACGTCAATGCGAGTCCTTAG 2919 0.4029 MAGFWSVFCGESGCSEAGRMPYSYDFRLLIDPSACVNHLLISCFDVLLLIMLLVSAIANGAIGLALLCFGTWVLEQRLRKAQTALPLNWWLLEIFHELTWLLVSLTISLNLKQLPRAWSRLFSILIFLVSGFFCASSLFYAISSRELSLKIASDILSFLGAILLLLFAYKESKHKGTDREIDESLYAPLNGESNKNDSIRYVTPFVKTGFFGRMSFWWLNSLMKMGKEKTLQDENIPRLREEDRAESCYLLFLDQLNRQKQKDQSLQPSVLRTIVLCHWKEILISGFFALLNVVAVSSGPLLLNSFILVAEGNEGFKYEAFVLAISLFFTKNIESLSQRQWYFRCRLIGLKVRSLLTAAIYRKQLRLSNSARLMHSGGQIMNYVTVDSYRIGEFSYWFHQTWTTSLQLCISLVILFRAVGLATIASLVVIVITVRCNTPIAKLQHKSAIERLRNEELKWLSAVQLRKVYNTFLFWSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFTRIVKFLEAPELQSANITQRPGQKVAICGEVGSGKPTLLAVILRVVPTTQGTIEVYGKFAYVSQTAWIQTGTIRENILFGAAMDAEKYQATLDRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQVARALYQSADIYLLDDPFSAVDAHTATNLFNEYIMEGLAGKTGLLVTHQVDFLPAFDSVLIMSDGQEFRDLVNAHKETAGSDQHVDVTSSQKHSNSDREIRKKSTEQHYEASKGDQLIKQEEREKGDRGFKPYIQYLNQSKGYIYFSVAALSHLLFVVGQILQNSWMAASVDNPQLLNSLFRAPMSFFDSTSLGRILSRVSSDLSIVDLDVAMGLMVAVGATMNCYSNLTVLAVVTWQVLFVSIPMIYFAIRLQRYYFASAKELMRMNGTTKSFVANHLAESVAGAVTIRAFEEEDRFCEKNLDLIDVNASP 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01068 972 Gene3D ABC transporter type 1, transmembrane domain 278 445 IPR036640 GO:0005524|GO:0016020
Pumo3g01068 972 Gene3D ABC transporter type 1, transmembrane domain 773 971 IPR036640 GO:0005524|GO:0016020
Pumo3g01068 972 ProSitePatterns ABC transporters family signature. 651 665 IPR017871 GO:0005524|GO:0016887
Pumo3g01068 972 Pfam ABC transporter 545 678 IPR003439 GO:0005524
Pumo3g01068 972 SUPERFAMILY ABC transporter transmembrane region 805 968 IPR036640 GO:0005524|GO:0016020
Pumo3g01068 972 Pfam ABC transporter transmembrane region 283 450 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g01068 972 Pfam ABC transporter transmembrane region 801 967 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g01068 972 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 283 446 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g01068 972 MobiDBLite consensus disorder prediction 751 775 - -
Pumo3g01068 972 MobiDBLite consensus disorder prediction 739 775 - -
Pumo3g01068 972 SMART AAA_5 553 726 IPR003593 GO:0016887
Pumo3g01068 972 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 835 972 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g01068 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 541 726 IPR027417 -
Pumo3g01068 972 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 446 829 - -
Pumo3g01068 972 Gene3D ABC transporter type 1, transmembrane domain 446 538 IPR036640 GO:0005524|GO:0016020
Pumo3g01068 972 SUPERFAMILY ABC transporter transmembrane region 271 540 IPR036640 GO:0005524|GO:0016020
Pumo3g01068 972 Gene3D - 539 772 IPR027417 -
Pumo3g01068 972 CDD ABCC_MRP_domain1 541 726 - -
Pumo3g01068 972 CDD ABC_6TM_ABCC_D1 284 535 IPR044746 GO:0140359
Pumo3g01068 972 FunFam Multidrug resistance-associated protein 1 523 770 - -
Pumo3g01068 972 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 526 749 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01068 Pumo-Chr3 16712857 16717167 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01068 513 735 Calmodulin-binding Proteins AT2G36910 31.276 9.90e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01068 K05666 - gmx:100817665 1657.11