Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01067 ATGGCGGGTTTTTGGAGCGTGTTTTGTGGGGAATCTGGTTGTTCAGAGGCTGGAAGAATGCCTTGCAGTCATGATTTTAGGCTTCTCATTGATCCTTCGGCTTGTGTCAACCATTTGTTGATCTCTTGCTTTGACGTAATGCTGCTTATCGTGCTTGTATTAATTATGATCCAGAAGTCAACATTAAAACCATCTCGGGGTCTAATACAGGTGCAAAGATATTCATATTTTCAGCTAGTTTCTGCCATAGCCAATGGTGCCCTTGGGTTGGCACTTTTGTGCTTTGGCATTTGGGTTTTAAGGGAAAGGTTGAGGAAAGCCCAAACTGTGTTGCCTCTTAACTGGTGGTTGCTCGAAATCTTTCATGGATTGACATGGTTGTTAGTGAGCTTGACAATTAGTCTTAAGTTGAAACAACTCCCAAGAGCATGGTCAAGGCTATTTGCTAGTCTAATATTCTTGGTTTCTGGTTTATTCTGTGCTTCATCATTGTTTTATGCAATTAGTAGCAGACAACTATCCCTTAAGATAGCTTCAGATATTCTATCTTTTCTGGGGGCGATATTATTGTTATCATGCACATATAAGGAATCCAAGCATAGGGACACAGACAGAGAAATTGATGAAAGTCTTTATGCCCCCTTAAACGGTGAGTCCAACAAAAATGATTCTATCAGATATGTAACCCCATTTGCCAAAACTGGATTCTTCGGCAGAATGTCATTTTGGTGGTTGAATTCATTGATAAAAATGGGAAAAGAGAAAACACTTCAGGATGAAGACATTCCGAGGTTACGTGAGGAGGATCGAGCAGAAAGTTGTTATTTGCTGTTTCTAGATCAATTGAACAGACAGAAACAGAAGGATCAATCCTCGCAGCCATCAGTTTTGAGGACAATAATTTTATGCCATTGGAAAGAAATTTTAATATCAGGATTCTTTGCATTGCTCAAGGTAGTTGCCCAGTCTTCAGGACCTCTTCTTATGAATTCTTTTATATTGGTTGCTGAGGGTAACGAGAGTTTCACAGGTGAAGGATTTCTGTTGGCCATATCACTTTTCTTTATAAAATTCATAGAATCCCTATCACAAAGGCAATGGAACTTCCGCTGCAGACTTATTGGTCTGAAGGTTAGGTCGTTGCTAACTGCAGCCATTTATAGAAAGCAATTGAGGTTATCCAATTCTTCTAGGTTGATGCACTCTGGTGGTCAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGTGACTTTCCCTATTCGTTTCACCAGACTTGGACAACTAGCTTACAGCTATGTATCTCCTTAGTTATACTATTTCGTGCTGTTGGATTGGCAACAATTGCCTCCTTGGTGGTGATAGTAATCACTGTGCTTTGTAATACTCCACTTGCAAAGTTACAGCACAAGTTTCAAAGCAAACTTATGGTGACACAAGATCAGAGATTGAAGGCTTGTTCTGAGGCTCTTGTGAATATGAAGGTGTTGAAGTTGTATGCGTGGGAAACCAATTTTAAAAGTGCTATAGAGAGATTAAGGAACGAGGAGTTCAAATGGTTGTCTGCAGTGCAATTAAGAAAGGCATACAACACCTTTCTCATGTGGTCCTCCCCTGTTTTGGTCTCTGCTGCTTCCTTTGGGGCATGTTACTTTCTTAATGTTCCTTTACATGCAAATAATGTTTTCACTTTTGTTGCAACTTTGCGCCTTGTTCAAACTCCAATTAGAACCATCCCTGACGTTATTGGGGTGGTCATTCAGGCAAAAGTTGCGTTTACTCGGATTGTAAAATTCCTGGAGTCACCAGAACTGCAGAGTGCAAATATCTCACAAAGGTGTCTCAATGAGAATAAGAGGGGTTCAATTTCAATAAAGTCTGCTGACTTTTCATGGGAAGATAATGTGTCAAACTCAACACTGAGAAACATAAATTTGGAGGTTAGACCAGGGCAAAAGGTGGTTATCTGTGGAGAGGTTGGCTCAGGCAAATCAACTCTCTTAGCAGCAATTCTCAGAGAAGTTCCTAATACTCAGGGGGCAATTGAAGTTTATGGGAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAGACAGGTACAATAAGGGAGAATATATTGTTTGGGGCAGCTATGGATGCTGAAAAATATCAAGTAACACTTCATAGGTCTTCACTATTGAAGGATCTTGAGTTGTTTCCCCATGGTGATCTCACTGAAATAGGGGAGAGAGGAGTCAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCACGTGCACTTTATCAGAATGCTGATATATATCTCTTAGATGATCCATTCAGTGCTGTTGATGCACATACTGCAACAAATTTGTTTAATGAATATTTAATGGAAGGACTTGCTGGGAAAACAGTCTTGCTCGTGACTCATCAAGTTGACTTCCTTCCAGTATTTGATTCTGTTTTGTTAATGTCAGATGGGGAAATCATAGAAGCTGCTCCTTATCACCATTTGTTGAGCTCAAGCCAAGAATTTCAGGACCTTGTGAAGGCCCACAATGAGACTGCTGGTTTTGACTGGCATGTGGATGTTACTTCTTCGCAGAAACATTCAAATAGTGCTAGAGACATCAGAAAAACATCTACCCAGCAGCATTATGAAGCATCAAAAGGTGATCAATTGATTAAGCAAGAAGAGAGAGAAAAAGGAGACCAAGGGTTCAAACCGTATATACAGTATCTGAATCAGAGCAAAGGATATATATACTTCTCTGTGGCTGCTCTTTCTCACCTAATATTTGTGGTTGGCCAAATATTACAAAACTCATGGATGGCCGCTAGTGTTGACAATCCTCGAGTCAGCACTTTGCAATTGATTCTTGTTTACTTGTTGATTGGAGTTATTTCAACACTTTTCTTGTTGATGAGAAGTCTTTTTGCAGTTGCTTCAGGCCTTGAATCATCAAAGTCTTTATTTTTACAGCTACTGAACTCCCTTTTTCGTGCCCCCATGTCGTTTTATGACTCCACTCCTTTAGGACGGATACTCAGTAGGGTCTCCTCAGATCTCAGCATTGTGGACCTTGATGTCGCAATGGGCCTTATGGTTGCTGTGGGAGCTACTATGAATTGCTATTCTAATCTAACCGTTTTAGCTGTTGTTACTTGGCAAGTCTTGTTTGTCTCCATACCAATGATTTATTTTGCAATCGGCCTGCAGAGATATTACTTTGCCTCTGCAAAAGAACTGATGCGGATGAATGGCACAACAAAATCCTTTGTTGCTAACCATCTTGCTGAATCTGTTGCTGGAGCTGTGACAATAAGGGCTTTTGAGGAGGAAGATCGTTTCTTTGAGAAAAATCTTGATCTAGTTGACATCAATGCGAGTCCTTACTTCCATAGTTTTACAGCGAATGAGTGGTTGATTCAACGATTAGAAATAGTGAGTGCTGTTGTTCTCGCATCTGCAGCACTGTGCATGGTTCTGCTTCCACCTGGAACTTGCTCCTCTGGATTTATTGGCATGGCTCTCTCTTATGGCCTTTCACTTAACATCTCCTTAGTAAATTCAATTCAAAATCAATGCAGCATAGCAAATTATATAATATCAGTGGAGAGGCTAAATCAGTATATGCATATACCAAGTGAGGCTCCAGAAGTAATAGAAGGAAATCGTCCTCCTGTGAATTGGCCAGTTGCTGGTAGAGTACAAATAAATGAATTGCAGATACGTTACAGGCCTGATGCACCACTAGTACTTCGTGGAATCACATGCACGTTTGAAGGAGGGCACAAAATTGGTATTGTTGGCCGCACAGGCAGTGGGAAGTCCACTCTTATAGGTGCTTTATTCCGTCTAGTGGAGCCAGCAGCTGGAAAAATCATTGTTGATGACATTGACATTTGTTCCATTGGCCTCCATGATTTGAGGTCGCGTTTTGGTATTATACCTCAGGATCCTACTCTTTTTAATGGGACAGTCAGATACAATTTGGACCCCTTATCTCAACACTCTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCAAGAGGCTGTCCAGGAGAAAGAAGAGGGATTAGACTCTTCAGTTGTTGAAGCTGGAGCAAACTGGAGCATGGGACAACGGCAGCTATTCTGTTTGGGGCGTGCTCTTCTCAGGAGAAGTCAGATATTGGTGCTAGATGAAGCAACTGCGTCAATTGATAATGCAACTGATTTGATTTTGCAGAAAACAATTAGGACCGAGTTTGCAGATTGTACAGTGATCACAGTAGCTCACAGGATACCAACTGTGATGGATTGCACTAAGGTTCTTGCCATCGGTGATGGGAAATTGGTGGAGTATGATGAGCCAATGAAGTTGATAAAGAGAGAAGGATCGCTGTTTGGGAAGCTTGTGAACGAATACTGGTCTCATTTTCAGTCTGCAGAATCTCATTGA 4440 0.4106 MAGFWSVFCGESGCSEAGRMPCSHDFRLLIDPSACVNHLLISCFDVMLLIVLVLIMIQKSTLKPSRGLIQVQRYSYFQLVSAIANGALGLALLCFGIWVLRERLRKAQTVLPLNWWLLEIFHGLTWLLVSLTISLKLKQLPRAWSRLFASLIFLVSGLFCASSLFYAISSRQLSLKIASDILSFLGAILLLSCTYKESKHRDTDREIDESLYAPLNGESNKNDSIRYVTPFAKTGFFGRMSFWWLNSLIKMGKEKTLQDEDIPRLREEDRAESCYLLFLDQLNRQKQKDQSSQPSVLRTIILCHWKEILISGFFALLKVVAQSSGPLLMNSFILVAEGNESFTGEGFLLAISLFFIKFIESLSQRQWNFRCRLIGLKVRSLLTAAIYRKQLRLSNSSRLMHSGGQIMNYVTVDAYRIGDFPYSFHQTWTTSLQLCISLVILFRAVGLATIASLVVIVITVLCNTPLAKLQHKFQSKLMVTQDQRLKACSEALVNMKVLKLYAWETNFKSAIERLRNEEFKWLSAVQLRKAYNTFLMWSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQTPIRTIPDVIGVVIQAKVAFTRIVKFLESPELQSANISQRCLNENKRGSISIKSADFSWEDNVSNSTLRNINLEVRPGQKVVICGEVGSGKSTLLAAILREVPNTQGAIEVYGKFAYVSQTAWIQTGTIRENILFGAAMDAEKYQVTLHRSSLLKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFNEYLMEGLAGKTVLLVTHQVDFLPVFDSVLLMSDGEIIEAAPYHHLLSSSQEFQDLVKAHNETAGFDWHVDVTSSQKHSNSARDIRKTSTQQHYEASKGDQLIKQEEREKGDQGFKPYIQYLNQSKGYIYFSVAALSHLIFVVGQILQNSWMAASVDNPRVSTLQLILVYLLIGVISTLFLLMRSLFAVASGLESSKSLFLQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVAMGLMVAVGATMNCYSNLTVLAVVTWQVLFVSIPMIYFAIGLQRYYFASAKELMRMNGTTKSFVANHLAESVAGAVTIRAFEEEDRFFEKNLDLVDINASPYFHSFTANEWLIQRLEIVSAVVLASAALCMVLLPPGTCSSGFIGMALSYGLSLNISLVNSIQNQCSIANYIISVERLNQYMHIPSEAPEVIEGNRPPVNWPVAGRVQINELQIRYRPDAPLVLRGITCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAAGKIIVDDIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHSDQEIWEVLGKCQLQEAVQEKEEGLDSSVVEAGANWSMGQRQLFCLGRALLRRSQILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLAIGDGKLVEYDEPMKLIKREGSLFGKLVNEYWSHFQSAESH 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01067 1479 Pfam ABC transporter 1250 1398 IPR003439 GO:0005524
Pumo3g01067 1479 Pfam ABC transporter transmembrane region 917 1168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g01067 1479 Pfam ABC transporter transmembrane region 308 576 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g01067 1479 MobiDBLite consensus disorder prediction 868 888 - -
Pumo3g01067 1479 CDD ABC_6TM_ABCC_D2 915 1208 IPR044726 GO:0140359
Pumo3g01067 1479 Gene3D - 618 853 IPR027417 -
Pumo3g01067 1479 SUPERFAMILY ABC transporter transmembrane region 297 602 IPR036640 GO:0005524|GO:0016020
Pumo3g01067 1479 FunFam ABC transporter C family member 5 882 1214 - -
Pumo3g01067 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1233 1467 IPR003439 GO:0005524
Pumo3g01067 1479 CDD ABCC_MRP_domain1 624 824 - -
Pumo3g01067 1479 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 847 IPR003439 GO:0005524
Pumo3g01067 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1223 1460 IPR027417 -
Pumo3g01067 1479 CDD ABCC_MRP_domain2 1231 1451 - -
Pumo3g01067 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g01067 1479 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 232 1467 - -
Pumo3g01067 1479 SMART AAA_5 1259 1444 IPR003593 GO:0016887
Pumo3g01067 1479 SMART AAA_5 651 824 IPR003593 GO:0016887
Pumo3g01067 1479 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524|GO:0016887
Pumo3g01067 1479 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Pumo3g01067 1479 SUPERFAMILY ABC transporter transmembrane region 913 1213 IPR036640 GO:0005524|GO:0016020
Pumo3g01067 1479 MobiDBLite consensus disorder prediction 865 888 - -
Pumo3g01067 1479 Pfam ABC transporter 642 776 IPR003439 GO:0005524
Pumo3g01067 1479 Gene3D - 1217 1468 IPR027417 -
Pumo3g01067 1479 Gene3D ABC transporter type 1, transmembrane domain 280 606 IPR036640 GO:0005524|GO:0016020
Pumo3g01067 1479 Gene3D ABC transporter type 1, transmembrane domain 881 1214 IPR036640 GO:0005524|GO:0016020
Pumo3g01067 1479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 846 IPR027417 -
Pumo3g01067 1479 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 927 1196 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g01067 1479 FunFam ABC transporter C family member 10 608 860 - -
Pumo3g01067 1479 FunFam ABC transporter C family member 10 292 605 - -
Pumo3g01067 1479 FunFam ABC transporter C family member 3 1216 1468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01067 Pumo-Chr3 16678210 16686025 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01067 622 852 Calmodulin-binding Proteins AT2G36910 32.016 1.42e-24 110