Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01063 ATGTCATTTTGGTGGTTGAATTCATTGATGAAAATGGGCAAAGAGAAAACACTTCAGGATGAAAACATACCAAGGTTACGGGAGGAGGATCGAGCAGAAAGTTGTTATTTACTGTTTCTGGATCAATTGAACAGACAGAAACAGAAGGATCAATCCTCGCAGCCATCAGTTTTGAGGACAATAATTTTATGCCATTGGAAAGAAATTTTAATATCAGGATTCTTTGCATTGCTTAAGGTAGTTGCTCTGTCGTCAGGACCTCTTCTTCTGAATTCTTTTATATTGGTTGCTGAGGGTAACGAGAGTTTCAAATATGAAGGTTTTGTGTTGGCCATATCACTTTTCTTTACAAAAAACATAGAATCCTTATCACAAAGGCAATGGTACTTCCGCTGCAGACTTATTGGTTTGAAAGTTAGGTCATTGCTAACTGCAGCCATTTTTAGAAAGCAGTTGAGGTTATCCAATTCTGGTAGATTGATGCACTCTGGTGGTGAGATAATGAATTATGTGACTGTGGATGCTTATAGAATTGGTGAATTTCCCTATTGGTTTCACCAGACTTGGACAACTAGCTTACAGCTATGTATCTCATTAGTTATACTTTTTCGTGCTGTTGGGCTGGCAACAATTGCCTCCTTGGTGGTGATAGTAATCACTTTGCTTTGCAATACTCCACTTGCAAAGTTACAGCACAAGTTTCAAAGCAAACTTATGGTGACACAAGATGAGAGACTGAAGGCTTGCTCTGAGGCTCTTGTGAATATGAAGGTGTTGAAGTTGTATGCGTGGGAAACCAATTTTAGAAGTGCTATAGAGAGATTAAGGAATGAGGAGCTCAAATGGTTGTCTGCAGTGCAATTAAGAAAGGCATACAACACCTTTCTCTTTTGGTCCTCCCCTGTTTTGGTCTCTGCTGCTTCCTTTGGGGCATGTTACTTTCTTAATGTTCCTTACATGCAAATAATGTTTTCACTTTTGTTGCAACTTTACGCCTTGTTCAAGTTCCAATTAGAACTATCCCTGATGTTATTGGGGTGGTCATTCAGGCAAAAGTGGCGTTTACCTCGGATTGTAAAATTCCTGGAGGCACCTGAACTGCAGAGTGCAAATGTCACACAAAGGTGTCTCACTGAGAATAAGAGGGGTTCAATTTCAATCAAGTCTGCTGACTTTTCATGGGAAGATAATGTATCAAAGCCAACACTGAGAAACATAAATTTGGAGGTTAGACCAGGGCAAAAGGTGGCTATCTGTGGAGAGGTTGGCTCTGGCAAATCAACTCTCTTAGCAGCAATACTCAGAGAAGTTCCTAATACTCAGGGGACATTTGAAGTTTATGGGAAGTTTGCCTATGTTTCTCAAACAGCATGGATACAGTCAGGTACAATACGGGAGAATGTATTGTTTGGAGCAGCCATGGATGCTGAAAAATACCAAGAAACACTTCATAGGTCTTCATTGTTGAAGGACCTTGAGTTGTTTCCCCATGGTGATCTCACTGAAATAGGGGAGAGAGGATGTCAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCGCGTGCACTGTATCAGAATGCTGA 1587 0.4077 MSFWWLNSLMKMGKEKTLQDENIPRLREEDRAESCYLLFLDQLNRQKQKDQSSQPSVLRTIILCHWKEILISGFFALLKVVALSSGPLLLNSFILVAEGNESFKYEGFVLAISLFFTKNIESLSQRQWYFRCRLIGLKVRSLLTAAIFRKQLRLSNSGRLMHSGGEIMNYVTVDAYRIGEFPYWFHQTWTTSLQLCISLVILFRAVGLATIASLVVIVITLLCNTPLAKLQHKFQSKLMVTQDERLKACSEALVNMKVLKLYAWETNFRSAIERLRNEELKWLSAVQLRKAYNTFLFWSSPVLVSAASFGACYFLNVPYMQIMFSLLLQLYALFKFQLELSLMLLGWSFRQKWRLPRIVKFLEAPELQSANVTQRCLTENKRGSISIKSADFSWEDNVSKPTLRNINLEVRPGQKVAICGEVGSGKSTLLAAILREVPNTQGTFEVYGKFAYVSQTAWIQSGTIRENVLFGAAMDAEKYQETLHRSSLLKDLELFPHGDLTEIGERGCQPEWRSEAANSTCACTVSEC 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01063 528 Gene3D - 363 510 IPR027417 -
Pumo3g01063 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 508 IPR027417 -
Pumo3g01063 528 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 508 - -
Pumo3g01063 528 FunFam ABC transporter C family member 10 53 366 - -
Pumo3g01063 528 CDD ABC_6TM_ABCC_D1 71 351 IPR044746 GO:0140359
Pumo3g01063 528 Gene3D ABC transporter type 1, transmembrane domain 41 362 IPR036640 GO:0005524|GO:0016020
Pumo3g01063 528 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 70 315 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g01063 528 Pfam ABC transporter 403 474 IPR003439 GO:0005524
Pumo3g01063 528 SUPERFAMILY ABC transporter transmembrane region 58 335 IPR036640 GO:0005524|GO:0016020
Pumo3g01063 528 Pfam ABC transporter transmembrane region 69 315 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01063 Pumo-Chr3 16641990 16645264 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01063 366 509 Calmodulin-binding Proteins AT2G36910 27.673 2.30e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01063 K05666 - gmx:100811468 887.486