Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01055 ATGGCTAATGCTGCTTCTTCCTCCTTTACTTGTTATTATTGGGTGATTCTTGCTCTGGGCCTGTGTTGTTTTAGTTGTTCCATTTCGGGCCAGGTTGGTTTGGGCTCGAGGTTATTGGCTAGCAAGGCCCAAACATGGGTTTCTGAAAATGGCACATTTGCTTTCGGGTTCACTCCAGCGGAGACTGATAATCGATTGTTTGTGATTGGCATTTGGTTTGCCCAGCTTCCAGGAGATCGAACTTTAGTTTGGTCACCCAATAGAGACACTCCTGTATCCCAAGAAGCAAAATTGGAGCTTGACACCACTGGCAACCTTGTTCTCATGGATGGAGACACCACAGTGTGGACCTCAAACACCTCAGGTGCTGATGTACAAACAGCAGTCATGGCAGAATCTGGCAACTTCATCCTCCACAACGCCAGCAACCACCCTGTGTGGCAGAGTTTTTCTCAACCTTCTGACACTCTCCTCCCCAACCAGCTTCTAACAGTTTCTTCAGAACTAACATCATCAAAGTCTTCCTCTCATGGTGGCTACTATGCTCTCAAAATGCTTCAACAACCTACTTCCCTAAGCCTTGCTCTCACTTACAATCTCCTTGAGACTTACCAAGCCTCAGATGAATCATACACCAACTATTCCTATTGGAAGGGCCCTGATATCTCCAATGTGACTGGGGAAGTTATAGCAGTTTTAGACCAAGCTGGAAGCTTTGGAATTGTGTATGGAGACTCATCTGATGGAGCAGTTTATGTGTACAAGAATGATGGTGATGATAAAGGCCTGTCTTCTGCAGTTCATCAATCTGCACCATTAACTGTTTTCAGGAGACTAACACTGGAAAAGAATGGAAATCTGCGGTTGTATCGATGGGACGAAGTGAATGGTTCAAGACAGTGGGTGCCACAGTGGGCTGCAGTTTCAAATCCATGTGACATTGCTGGAGTTTGTGGCAATGGAGTATGTAATTTGGATAGGAGTAAGACTACAGCCACTTGCACTTGCTTGCCAGGAACTTCCAAAGTTGGTAGGGATGGCCAGTGCTATGAGAATTCATCTCTTGTGGGAAAATGCAATGGCAAGCATGAAAACCTGACATCCCAGTTTAGGATTTCAACAGTGCAGCAAACCAACTATTATTTTTCTGAATTTTCAGTAATAGCTAACTATAGTGATATTTCTAATGTGTCAAAATGTGGGGATGCTTGCTTGTCAGATTGTGATTGTGTGGCTTCTGTTTATGGGCTAAATGAGGAGAGACCATATTGTTGGGTGTTGAGGAGCTTAAGTTTTGGTGGTTTTGAGGATACTAGCTCAACTTTGTTTGTGAAGGTCAGAGCAAATGGGTCATGGACTCCAGAAGGCCAAGAAGGAGGGTCTAATAGCTCCTCTGATGGAATGGGAAGTGCAAAGGAGAAGGCTGTGATTATTCCCACAGTTCTGAGCATGGTAATTCTCATTGTTTTGCTGTGTTTATTACTGTATTACAGTGTTCACAGAAAAAGAACTTTGAAAAGGGAGATGGAAAGTTCCTTGATCTTATCAGGTGCTCCAATGAATTTCACCTACCGTGATTTGCAAATTAGGACATGCAACTTTTCCCAGCTGTTAGGAACAGGTGGATTTGGGAGTGTGTATAAAGGAAGCCTGGGAGATGGTACCCTTGTGGCAGTGAAGAAACTTGACAAGGTTTTGCCTCATGGAGAAAAGGAATTTATCACTGAAGTAAACACTATTGGCTCAATGCATCATATGAATTTGGTTCGCCTATGTGGCTATTGTTCAGAGGGATCACATAGGCTTCTGGTTTATGAGTTCATGAAGAATGGATCCTTGGATAAATGGATCTTCCCTTCATATCAAGCGCGAGATAGATTGCTAGATTGGACAACTCGTTTCAATATAGCCATAGCTACTGCACAAGGGATTGCCTACTTTCATGAGCAGTGTAGGGATCGGATAATACATTGTGACATAAAACCGGAAAATATATTGGTAGATGAAAACTTTTGTCCTAAAGTATCTGATTTTGGACTGGCCAAATTGATGGGAAGGGAGCACTCTCATGTGGTAACAATGGTCAGAGGCACTAGAGGTTATTTGGCACCAGAATGGGTTGGTAATCGCCCTATAACTGTCAAAGCTGATGTTTACAGCTATGGGATGCTTCTTTTAGAGATCATTGGTGGCAGGAGAAATCTTGACATGTCCTTTGGTGCTGAGGATTTCTTTTATCCTGGTTGGGCTTACAAGGAGATGACAAATGGGTCAATAGTTAAGGTGGCAGATAGAAGATTAAATGGGGCAGTTGACGAAGAAGAGCTAACGAGAGCTCTGAAAGTTGCATTTTGGTGCATCCAAGATGAGGTTTCCATGCGACCAACAATGGGGGAAGTGGTAAGACTGCTGGAAGATTCAATCGACATTAATATGCCACCAATGCCGCAAACAGTGCTAGAGTTAATTGAGGAAGGCTTAGACCAAGTATACAAAGCTATGAAAAGAGAGTATAATCAGTCCAGCTCATTCACTATGACTAGCCATCTTACATCTCATGCCACATGTAGCAATTCCACAATGTCACCAAGATAG 2595 0.432 MANAASSSFTCYYWVILALGLCCFSCSISGQVGLGSRLLASKAQTWVSENGTFAFGFTPAETDNRLFVIGIWFAQLPGDRTLVWSPNRDTPVSQEAKLELDTTGNLVLMDGDTTVWTSNTSGADVQTAVMAESGNFILHNASNHPVWQSFSQPSDTLLPNQLLTVSSELTSSKSSSHGGYYALKMLQQPTSLSLALTYNLLETYQASDESYTNYSYWKGPDISNVTGEVIAVLDQAGSFGIVYGDSSDGAVYVYKNDGDDKGLSSAVHQSAPLTVFRRLTLEKNGNLRLYRWDEVNGSRQWVPQWAAVSNPCDIAGVCGNGVCNLDRSKTTATCTCLPGTSKVGRDGQCYENSSLVGKCNGKHENLTSQFRISTVQQTNYYFSEFSVIANYSDISNVSKCGDACLSDCDCVASVYGLNEERPYCWVLRSLSFGGFEDTSSTLFVKVRANGSWTPEGQEGGSNSSSDGMGSAKEKAVIIPTVLSMVILIVLLCLLLYYSVHRKRTLKREMESSLILSGAPMNFTYRDLQIRTCNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDKVLPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPSYQARDRLLDWTTRFNIAIATAQGIAYFHEQCRDRIIHCDIKPENILVDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVGNRPITVKADVYSYGMLLLEIIGGRRNLDMSFGAEDFFYPGWAYKEMTNGSIVKVADRRLNGAVDEEELTRALKVAFWCIQDEVSMRPTMGEVVRLLEDSIDINMPPMPQTVLELIEEGLDQVYKAMKREYNQSSSFTMTSHLTSHATCSNSTMSPR 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01055 864 CDD B_lectin 41 153 IPR001480 -
Pumo3g01055 864 ProSitePatterns Protein kinases ATP-binding region signature. 538 561 IPR017441 GO:0005524
Pumo3g01055 864 Pfam S-locus glycoprotein domain 264 340 IPR000858 GO:0048544
Pumo3g01055 864 CDD STKc_IRAK 538 805 - -
Pumo3g01055 864 SMART serkin_6 532 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01055 864 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
Pumo3g01055 864 ProSiteProfiles Protein kinase domain profile. 532 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01055 864 Gene3D Transferase(Phosphotransferase) domain 1 608 819 - -
Pumo3g01055 864 Gene3D Phosphorylase Kinase; domain 1 496 607 - -
Pumo3g01055 864 Pfam D-mannose binding lectin 81 168 IPR001480 -
Pumo3g01055 864 PIRSF SRK 2 858 IPR024171 GO:0004674
Pumo3g01055 864 SMART blect_4 37 153 IPR001480 -
Pumo3g01055 864 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 167 IPR036426 -
Pumo3g01055 864 ProSiteProfiles Bulb-type lectin domain profile. 31 151 IPR001480 -
Pumo3g01055 864 Gene3D - 34 152 IPR036426 -
Pumo3g01055 864 Pfam Protein kinase domain 535 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01055 864 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 608 814 - -
Pumo3g01055 864 PANTHER OS07G0415500 PROTEIN 10 816 - -
Pumo3g01055 864 FunFam serine/threonine-protein kinase PBS1-like 500 607 - -
Pumo3g01055 864 FunFam Serine/threonine-protein kinase 33 151 - -
Pumo3g01055 864 SUPERFAMILY Protein kinase-like (PK-like) 510 804 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01055 Pumo-Chr3 16154457 16160767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01055 486 814 Receptor kinase-like Gene Family AT5G20050 42.697 1.53e-79 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pumo3g01055 Pkinase 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01055 - - gmx:100794281 1632.08