Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01046 ATGTCAGAATCTGAGGAAGAAAATCCAGACTATGTTCCCAGGTCAAAGCCAGCAGCAGAGGAAGGTGGCTGCACCATGGACATCGATCTGGACTTAGAAACTTCATGGCCTTTGGATCACATGGCCTTTGGCTCCAACCCCATGTCACCTTTTCTCTTCTCCACTTCCTCTGACCAACCTTACTCTCCTCTTTGGGCTTTCTCTGATGGAGAAGACCCCAAGCTTCCAGCTTCTGCCTTCTCTGATTGCCACAAGATCTTCTCTTGTGATTCAAATTCAATGGCTGAAAAGCCAGTGGAGAATGACGACAACAAAAAACTTTTGCCACCACTTGTGCCTATGCCGCCAGTGGAAATTTTGGATGGTTATTGTGTAATCAAGGAAAGGATGACACAAGCACTTCGTTACTTCAAAGAGTTGACTGAATTGAATGTTCTGGCTCAAGTTTGGGCACCTGTGCGGAATGGTAATCGGTATGTGCTTACAACTTCAGGTCAACCCTTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACAGTCTCTCTGATGTACATGTTTTCTGTGGATGGGGAGAATGATGGAAGTTTGGGACTCCCTGGTCGGGTTTTTCAGCAGAAATTACCGGAATGGACTCCCAATGTTCTGTATTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTAAACATTACAATGTTCGTGGAACCTTGGCTTTGCCCGTGTTTGAACCTTCAATGCAGTCATGTGTTGGTGTACTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGACAGTAAATTTGAGGAGTTCGGAAATTTTGGACCATCCATACACTCAGATATGTAATGAAGGTCGTCTGAATGCATTATCAGAGATCTTGGAGATATTGACAGTGGTATGTGAAACTCATAATTTACCTCTGGCCCAGACATGGATTCCCTGTAAGCATCGAAGTGTTTTGGCCCAAGGTGGTGGTGTAAAGAAAAGTTGTTCTAGTTTTGATGGTAGTTGCATGGGGAAAGTTTGCATGTCTACAACTGACATAGCATTCTATATCATAGATGCTCATTTATGGGGTTTTCGTGAGGCCTGTGTTGAGCATCACTTACAACAAAGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCACAGCATGTGCTTCTGTTCAAACGTTACCCAATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGGTTAAAAAGCTGTTTTGCAATATGTTTACGAAGCTCTCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGAGTCACAGACTCTCATGAACAAAAGACTTTGTTGGGATCCATATGGGCAACAATGAAACAACATTTCCAGAGTCTTAAGATTGCTTCTGGTGTTGAACTTGAGGATGGTTCAATTGAAATTATTGAAGCAACAATTGAAAGAGTTCATACGAGGCTTGAATCTATTCCAATTGCCCCATCTATTAAATCACCACCTAGACCTGATACCTCACCAAACATGGGGGAAGAAGTGCCACAGGATCCATCAGAACAACAAATATTGATGTACTGTAATGAAATCAATAATGGAGGGAGTCTTGGTAAAAACGCAGCCGGAAACATTGATTGTATGCCCTCCTTAGAGACTAAAAACATAAAGAAACCCTTAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTCTTGCAACGTTATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACCACAATGAAGCGCATCTGCAGGCAGCATGGCATATCCCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTGTCGAAGCTCAAGCGTGTTATTGAATCTGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTGAGCAAAAGTCCAATTCCCATTGCTGTTGGTTCCTTTCCTGAGCCTTCTACTCCAAACAAGTTCAGCCAGCCAGCCTCATTAAGCATTAAGCCACCAGAGCTTCAGATGAAAGAGAATGAATTGAATGCCTCCAAAGCATTAGAAACAAACAGACAGGCTGGAATGGAAGATCAATTGCTAGGAGGCTCACCACATCTTGAGAAAGTAACTAACGATAAAGGTGGGTATACTCAAGAGGTTGGGAAAGAATCAAAAAGGACTAGAACTGGGAGTGGCTCAAGTGAGGATAGCACAAATCCTACTTCTCATGGTTCATGCCATGACAGTCCCCCAAATGAAAGTTCACCTGTAAAGGATATTTTCATTACTTCCAACAATGATCAGAGTGCTGGGCTAAAGAGATCACCAGAGTCAACACTGCAGCCAACTTCTAATACGCCAAACCGGCCAACTGCTTACCCTATGCCCGACTTTGTTGCCACAGAACTTCAAGAGCCATTTGGAGGGATGCTAATAGAGGATGCTGGTAGCTCTAAAGACTTAAGAAATTTGTGTCCTTCAGTAGCTGAGGCCATTTTGGAGGATATAGTTCCAGAAGCTTGTGGGATTAATCTTCCAGGTCCAGATTTGTCTCCTAAGCAAAGCATGGGTACTCCTAATAAAGTAGTGACACCTTTTGCAGCTAAGAAAGAAATGAAGACCGTGACTATCAAGGCAACATACAGAGAAGATATCATAAGATTTCGGGTCTCGTTGACCTGTGGCATTGTCGAACTGAAAGAAGAAGTTGCCAAAAGATTGAAACTAGAGGTGGGTACATTTGATATTAAGTACCTGGATGATGATCACGAATGGGTTTTGATAGCCTGTGATGCAGACCTACAGGAGTGCATGGATGTTTCAAGATCATCAGGAAGCAACATAATCAGGGTTTTGGTGCATGACATAACTTCCAATCTTGGAAGCTCATGTGAGAGCTCGGGGGAGTGA 2967 0.4291 MSESEEENPDYVPRSKPAAEEGGCTMDIDLDLETSWPLDHMAFGSNPMSPFLFSTSSDQPYSPLWAFSDGEDPKLPASAFSDCHKIFSCDSNSMAEKPVENDDNKKLLPPLVPMPPVEILDGYCVIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDGSLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAKHYNVRGTLALPVFEPSMQSCVGVLELIMTSQKINYAPEVDKICKALETVNLRSSEILDHPYTQICNEGRLNALSEILEILTVVCETHNLPLAQTWIPCKHRSVLAQGGGVKKSCSSFDGSCMGKVCMSTTDIAFYIIDAHLWGFREACVEHHLQQSQGVAGRAFLSHSMCFCSNVTQFCKTDYPLVHYALMFGLKSCFAICLRSSHTGNDDYVLEFFLPPRVTDSHEQKTLLGSIWATMKQHFQSLKIASGVELEDGSIEIIEATIERVHTRLESIPIAPSIKSPPRPDTSPNMGEEVPQDPSEQQILMYCNEINNGGSLGKNAAGNIDCMPSLETKNIKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSKSPIPIAVGSFPEPSTPNKFSQPASLSIKPPELQMKENELNASKALETNRQAGMEDQLLGGSPHLEKVTNDKGGYTQEVGKESKRTRTGSGSSEDSTNPTSHGSCHDSPPNESSPVKDIFITSNNDQSAGLKRSPESTLQPTSNTPNRPTAYPMPDFVATELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDIVPEACGINLPGPDLSPKQSMGTPNKVVTPFAAKKEMKTVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITSNLGSSCESSGE 988
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01046 988 MobiDBLite consensus disorder prediction 715 814 - -
Pumo3g01046 988 SMART PB1_new 893 975 IPR000270 GO:0005515
Pumo3g01046 988 PANTHER PROTEIN NLP8 57 987 IPR045012 GO:0003700
Pumo3g01046 988 MobiDBLite consensus disorder prediction 674 688 - -
Pumo3g01046 988 ProSiteProfiles PB1 domain profile. 893 975 IPR000270 GO:0005515
Pumo3g01046 988 SUPERFAMILY CAD & PB1 domains 891 978 - -
Pumo3g01046 988 MobiDBLite consensus disorder prediction 510 533 - -
Pumo3g01046 988 Gene3D - 890 974 - -
Pumo3g01046 988 MobiDBLite consensus disorder prediction 1 24 - -
Pumo3g01046 988 MobiDBLite consensus disorder prediction 750 810 - -
Pumo3g01046 988 Pfam RWP-RK domain 585 633 IPR003035 -
Pumo3g01046 988 MobiDBLite consensus disorder prediction 673 693 - -
Pumo3g01046 988 FunFam RWP-RK domain-containing protein 890 974 - -
Pumo3g01046 988 ProSiteProfiles RWP-RK domain profile. 572 653 IPR003035 -
Pumo3g01046 988 CDD PB1_NLP 894 974 IPR034891 -
Pumo3g01046 988 Pfam PB1 domain 893 974 IPR000270 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo3g01046 Pumo-Chr3 15960320 15965234 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01046 260 988 NLP Transcription Factor Family AT4G24020 53.351 0.0 691
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pumo3g01046 PB1 2.9e-19 CL0072