Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01040 ATGAAAGAGATCAGAAGTGTCAGTTCCCACCGTTCCTTATTATCAAAATGGTCCTTTAATAATGCCACGGACAGGTCAAAGTTGGCAGATTTGATGTTTCATGAGGATGAAGCATTTGAAAGCCGATGTGCTAAGGAGATAAGAAGAAGAAAAAAAGTTGAAGAACAATTGGCAAGGGAAAAGCAAGAAGTGCAGAAAATGAAGAATCAGCGAGATGAAATACTTGAAGAATTGCAAATGGTCAAAGACCAAAATTCAGCACTTATGAACCAAATTTCTGAGTCCCAGTGTGTGGCAACAGAGTTGGAGGAGAAGATCATATCAGCTGTGGACCTCTTGATAAGTTTCAGGGAAAAGAGAGATAGGCTTAGGATAGAGCATGCAAATGCAGTAAGGGAAGTCAAAGTGCTGAGAAAATTTGGGGAAGCAGATACTTCCTTCTCTTATCGGGTAGAATTCCCTGTATTTTCTTTTGTGGAGATCAATGAGGCAACTAATGATTTCGATCCATCTTGGAAGATTGGAGACGGAATGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTCGTCAGAGCCTATTAGAGTTCCAGCATCAGGTAGAGGTCTTCAGTAGGGTAAGACATCCAAACCTGTTAACACTAATGGGAAGCTGTGCAGAGTCTAGGTCACTTGTGTATGAGTACATAAACAATGGCAGCCTTGAAAGCCATCTTGCCCACAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATATCCATTGCTACTGACATATGCTCTGCTCTAATCTTCCTTCACTCCAGTGAGCCTTGTATTATCCATGGGAATTTGAAACCTAGTAAGGTTCTCCTTGATGCCAACTTTGTTGCCAAACTCAGTGACTTGGGCATTCCTAGTTTAGTCCAGCAAAGTTTGGATTCAGCTGACACAAGCACAATATGTAATAACCCAAATGAACGTTTGGCATATGTGGATCCAGAGTATTTTGTCACTGGCAAGTTTACTCCAGAATCGGATGTATATTCATTCGGAGTCATATTATTACAACTTCTAACTGGAAGACCACTTTTGGGGCTAGTTAGAGATATGAAATGTGCATTGGAAAAGGAAAACCTTGAAGCAGTCTTGGACTCTTCGGCTGGTGAATGGCCACTTTTTCAAACCGAACAGCTGGCATATTTAGCATTGAGGTGTTGTGAAAAGACTTGGTTGAACCGGCCGGACCTTGTGTCAGAAATCTGGAGTGTTCTTGAACCATTCAAAGCTACTTGCATCGACATGCCACCATATTTGATTTCTAAGAAGCTTCGTCGTGTTCCTTCCCATTTTGTCTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACATATGAAGAAGAGGCAATAAGTGGATGGTTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTCAAGCTTGACCACACAGATTTGGTACCTAACTATGCTCTACATAATGCAATTCAGGAGTGGCAGCAACAGTGA 1563 0.4191 MKEIRSVSSHRSLLSKWSFNNATDRSKLADLMFHEDEAFESRCAKEIRRRKKVEEQLAREKQEVQKMKNQRDEILEELQMVKDQNSALMNQISESQCVATELEEKIISAVDLLISFREKRDRLRIEHANAVREVKVLRKFGEADTSFSYRVEFPVFSFVEINEATNDFDPSWKIGDGMYGSVYKGLLRNMHVAIKMLPSYGRQSLLEFQHQVEVFSRVRHPNLLTLMGSCAESRSLVYEYINNGSLESHLAHKEKNPLPWQIRISIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQQSLDSADTSTICNNPNERLAYVDPEYFVTGKFTPESDVYSFGVILLQLLTGRPLLGLVRDMKCALEKENLEAVLDSSAGEWPLFQTEQLAYLALRCCEKTWLNRPDLVSEIWSVLEPFKATCIDMPPYLISKKLRRVPSHFVCPIVQEVMEDPYIAADGFTYEEEAISGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAIQEWQQQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01040 520 ProSiteProfiles U-box domain profile. 450 520 IPR003613 GO:0004842|GO:0016567
Pumo3g01040 520 ProSitePatterns Protein kinases ATP-binding region signature. 174 195 IPR017441 GO:0005524
Pumo3g01040 520 Pfam Protein tyrosine and serine/threonine kinase 173 421 IPR001245 GO:0004672|GO:0006468
Pumo3g01040 520 Coils Coil 43 105 - -
Pumo3g01040 520 PANTHER OS02G0152300 PROTEIN 19 516 - -
Pumo3g01040 520 SMART Ubox_2 454 517 IPR003613 GO:0004842|GO:0016567
Pumo3g01040 520 ProSiteProfiles Protein kinase domain profile. 168 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01040 520 Gene3D Phosphorylase Kinase; domain 1 141 240 - -
Pumo3g01040 520 SUPERFAMILY RING/U-box 448 520 - -
Pumo3g01040 520 SUPERFAMILY Protein kinase-like (PK-like) 144 430 IPR011009 -
Pumo3g01040 520 CDD RING-Ubox_WDSUB1-like 452 507 - -
Pumo3g01040 520 Pfam U-box domain 451 519 IPR003613 GO:0004842|GO:0016567
Pumo3g01040 520 Gene3D Transferase(Phosphotransferase) domain 1 241 436 - -
Pumo3g01040 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 520 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01040 Pumo-Chr3 15924949 15928181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01040 37 520 U-box Gene Family AT3G49060 53.279 8.86e-172 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pumo3g01040 PK_Tyr_Ser-Thr 1.9e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01040 - - gmx:100799675 974.156