Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01039 ATGCCAGTTGCAAAACTCCCGGCCTCTGGCACAATCGATATCAAGAAAACAGATGATGGAAATGATTCTTTAGATACAATAATCAGACAAGCAATTGGAAAAGAACCTTTGCTTTCCTTTCCTAGGGCCGGTGACAGCCCAGTACAGTGGATTCAATTACTTAATGCTTTAGATCAGCAAGAACTTCCAGGGTGGCCTTTGCTCTCTCCTGTGAAGGTTCAGTTACAAAAGTGCAACAAGTGTTCTCGAGAATTTTGCTCTCCCATTAACTATAGAAGGCATATACGCGTACAGCATCGGCTGAAAAAGCTTGATAAGGATTCTAAAACAAATAGGGATCTTTTAGGGGCATACTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAGTTGCGTCATTCAAGAATGTGATGCTGGAGGAAGTTCCAGGGTCTTCAATTTTAGAAGCTTTGACAACTCTTAGAAAACAAGGATTTTCTTCTCTTCCACAATATTATCTGAGGGCTGGTTCTGCCCTTTTGAATATTGTTCAATCCAGGCCTTCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTAGATGATTCTAGTGAAAAAACATTTTTGGTTGGATCAGCAGTGTCAATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAACTGGTGAAAGCCTGGCTTGCTGACAAGGATGCTGAAGCATTGAGATGCCAGAAGCTGCTGGTGGAGGAGGAGGAAGCTGCTCAGAAAAGAAAAGCTGAAATTTTAGAGAGGAAACGCCAGAAAAAGCTTAGACAGAAAGAACACAAGGCAAGGGAACGACTCGAAGATGACACAGAAATTAAAGAGAACATAAGCAGCGCAGGAGAGGATATTTCACCAGCTGAAGCATCTTCTGGTACATGTGACTTTGAAGCACATAATCCAGATATATTTGCGGAATATTCTCCTCCACCACATGTAACTTCTCACTGCCTAGACACTAATGAAGTTATGGAAGGGGATACACTGTCAGGGTATGATTGTGACACTGATCTGTATATAGAGCGACAGACATCACGAGGACATAATCGCCGGCGCATAATGGCTGCCAGATGGCAAGGGCTGTCAAAATCACAATGGGCCAAAGCCAATGGTTCACATGCAGGCCAAAATTCTCAAATGAAGCTTGGAGTCATTCAAAAACATGGAACCAACCGTGATCAAAGGGCAGCTCCTATAGTTAATGGTAGTAAGGTTTGGAGCCGAAAACCTAAACCAGAAACTAATGGGGTGGTTTTAAAAGCGAAACTGCAGAAAGAACCAGATAAAGGTAAGAATCATGAAGTTTTGATAGGATCTGTATCAGTTAGTCTGGGTAATTGCAGCCATTCAGAAGGGAATTTGGTGGCACCCCAGCGGGACTGCTTGGTAAAGAATTCAGCCAAGCAGAATACTGCTCAGGAGAAGCCAGTGAAACATGATTCCTCTCAGGGAATCAATGGTCGGTTAACGGTTAAGCTTTGGAGGCCGGTTAGCCAGCATGGAACTAAAGATCCATTGCCACTTCAAAATGGTGGGACAGAAGCTGATGTAATTAATGGGAAATATGATCAAAATTTGCCAGGTCAAAGTAGTTTAAGGTTGTGTAGTATAGATGGTAGTGATATTGGTTTTTGGGACAATTTTTCCTACACTGGGGCTAAAGTAGATTCAGAAAGCTTACGTCTATCCAGTCACGCTGCAAAAGCCTTTCTTGCACAAAGATGGAAAGAAGCTATCTCATCAAACCATGTGAAATTGGTTGTTACACCTGATTGTCTATCTTATAATGCGGACAGATGTAGCATTCTTGAAAATACAGAGAATCGATTGTCTGCAACCTCCGGAGTTGCTAAATCCAAACCCAAAACGAAGCCTGATAAGGGAATGAAGATAAAGTACATTCCCAAACAAAAAGCAGCAACCTAA 2007 0.421 MPVAKLPASGTIDIKKTDDGNDSLDTIIRQAIGKEPLLSFPRAGDSPVQWIQLLNALDQQELPGWPLLSPVKVQLQKCNKCSREFCSPINYRRHIRVQHRLKKLDKDSKTNRDLLGAYWDKLSVEEAKEVASFKNVMLEEVPGSSILEALTTLRKQGFSSLPQYYLRAGSALLNIVQSRPSSFPISSQELFSILDDSSEKTFLVGSAVSMQRYVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKLLVEEEEAAQKRKAEILERKRQKKLRQKEHKARERLEDDTEIKENISSAGEDISPAEASSGTCDFEAHNPDIFAEYSPPPHVTSHCLDTNEVMEGDTLSGYDCDTDLYIERQTSRGHNRRRIMAARWQGLSKSQWAKANGSHAGQNSQMKLGVIQKHGTNRDQRAAPIVNGSKVWSRKPKPETNGVVLKAKLQKEPDKGKNHEVLIGSVSVSLGNCSHSEGNLVAPQRDCLVKNSAKQNTAQEKPVKHDSSQGINGRLTVKLWRPVSQHGTKDPLPLQNGGTEADVINGKYDQNLPGQSSLRLCSIDGSDIGFWDNFSYTGAKVDSESLRLSSHAAKAFLAQRWKEAISSNHVKLVVTPDCLSYNADRCSILENTENRLSATSGVAKSKPKTKPDKGMKIKYIPKQKAAT 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01039 668 MobiDBLite consensus disorder prediction 288 304 - -
Pumo3g01039 668 Coils Coil 272 292 - -
Pumo3g01039 668 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Pumo3g01039 668 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 667 - -
Pumo3g01039 668 MobiDBLite consensus disorder prediction 278 319 - -
Pumo3g01039 668 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 104 IPR013087 -
Pumo3g01039 668 MobiDBLite consensus disorder prediction 640 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01039 Pumo-Chr3 15916793 15922159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01039 19 665 C2H2 Transcription Factor Family AT4G25610 45.399 1.08e-154 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g01039 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01039 - - gmx:100799153 1218.37