Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01031 ATGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGAAGTTAGTAAACATATTGAAACAGATGGACCCAAAGGATCCTTTTCGGATTGATATGACTGATAAGCTTTTGGAAAAACTCTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCACACTATGCGAACGCTTAACTGTGTCATCCTTCCTTCTGCGTAGGCTCTCAACTGTTTTGGTGCGACTAAAATTTTCTGAGCACTTGAAAGAAGCTGTCACATACATTGAGCAAGGGCACATACGAGTTGGTCCAGAGACCGTTACAGACCCAGCTTTCCTTGGTAGATTGTCAAATGTGATCAAGTTCAAGTTGGTATTCAGTATTCTGCATCTTTTGCCTGTTTTCTCCACTGCTCAAGTTGCAGATATTCTAACCAAACCTATAGGAATGCTAAACATAAATTCCAACTAG 453 0.4018 MRKLKFHEKKLLKKKLVNILKQMDPKDPFRIDMTDKLLEKLYNMGVIPTRQSITLCERLTVSSFLLRRLSTVLVRLKFSEHLKEAVTYIEQGHIRVGPETVTDPAFLGRLSNVIKFKLVFSILHLLPVFSTAQVADILTKPIGMLNINSN 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01031 150 CDD S4 67 117 - -
Pumo3g01031 150 PANTHER 30S 40S RIBOSOMAL PROTEIN 9 117 IPR022801 GO:0003735|GO:0015935|GO:0019843
Pumo3g01031 150 Gene3D - 67 124 IPR036986 GO:0003723
Pumo3g01031 150 SMART s4_6 67 127 IPR002942 GO:0003723
Pumo3g01031 150 ProSiteProfiles S4 RNA-binding domain profile. 67 125 - -
Pumo3g01031 150 SUPERFAMILY Alpha-L RNA-binding motif 9 117 - -
Pumo3g01031 150 Pfam Ribosomal protein S4/S9 N-terminal domain 13 53 IPR001912 GO:0019843
Pumo3g01031 150 Pfam S4 domain 67 106 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01031 Pumo-Chr3 15804809 15807269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01031 23 112 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 32.967 1.05e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01031 K14560 - gmx:100782389 173.711