Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01018 ATGATACTTGTCTATGAGTATGTTGAAAAGGGTCCACTGAAGAAGCATTTATATGGTTCATCACTACAAACACCTCTCTCTTGGAAGCAGCGGCTTGAAATATGCATTGGTGCGGCTAGAGGCCTTCACTATCTCCACACTGGCTTTGCTCAAGGAATCATCCACCGTGACATCAAATCAACCAACATATTACTTGATGAAAACTATGTGGCCAAGGTTGCTGACTTTGGTCTTTCAAGGTCAGGGCCATGCATCAATGAAACACATGTGAGTACTAATGTGAAAGGTAGTTTTGGTTATCTTGATCCTGAGTATTACAGGAGGCAGCAGCTTACAGATAAGTCAGATGTGTATTCATTTGGGGTTGTGCTTTTTGAGGTTCTTTGTGGAAGACCTGCTGTTGATCCACAACTTGCAAGAGAACAGGTGAATTTGGCAGAATGGGCAATTGAATGGCTGCAGAAGGGTATGCTGGAGCAAATTGTTGATCCGCGTCTTGTTGGACAGATCCAACAAAGCTCCTTGAAAAAATTTTGTGAAACTGCAGAGAAATGTTTGGCTGAATATGGTGTTGATAGGCCAGCCATGGGTGATGTCTTGTGGAATTTGGAATATGCACTTCAGCTCCAAGAAAGTGGACAACCAAGGGAGCCACATGCCAATAGCAGTGCTAGTGAATCTGTGAGTGTGACAAATGCAGTTATTCCTGGAAATCCTTCTAGCAACAGGACAGAGAGGGATTATTATAACTGTTCTTCAGATGTAAGTACTAGCCAAGTGTTTTCCCAGCTAATGAACAATGAAGGCAGATAG 813 0.428 MILVYEYVEKGPLKKHLYGSSLQTPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPCINETHVSTNVKGSFGYLDPEYYRRQQLTDKSDVYSFGVVLFEVLCGRPAVDPQLAREQVNLAEWAIEWLQKGMLEQIVDPRLVGQIQQSSLKKFCETAEKCLAEYGVDRPAMGDVLWNLEYALQLQESGQPREPHANSSASESVSVTNAVIPGNPSSNRTERDYYNCSSDVSTSQVFSQLMNNEGR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01018 270 SUPERFAMILY Protein kinase-like (PK-like) 2 210 IPR011009 -
Pumo3g01018 270 MobiDBLite consensus disorder prediction 212 249 - -
Pumo3g01018 270 Pfam Protein tyrosine and serine/threonine kinase 2 145 IPR001245 GO:0004672|GO:0006468
Pumo3g01018 270 PANTHER OS07G0166700 PROTEIN 1 210 IPR045272 GO:0004714|GO:0006468
Pumo3g01018 270 Gene3D Transferase(Phosphotransferase) domain 1 8 229 - -
Pumo3g01018 270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 53 65 IPR008271 GO:0004672|GO:0006468
Pumo3g01018 270 ProSiteProfiles Protein kinase domain profile. 1 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01018 270 SMART serkin_6 1 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01018 270 FunFam Receptor-like protein kinase FERONIA 8 225 - -
Pumo3g01018 270 MobiDBLite consensus disorder prediction 214 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01018 Pumo-Chr3 15666238 15667503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01018 1 270 Receptor kinase-like Gene Family AT3G46290 64.286 1.02e-122 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Pumo3g01018 PK_Tyr_Ser-Thr 5.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01018 - - gmx:100801169 525.013