Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01008 ATGGTGTCCAAAAACCCGAACCCCTCTGAAGCTTTCTACTTGGACCCCTCCGGCATGTCGCTCCCCGGAGTCCTCCCCTTCGCCGCCGCTACCTCCGCCGCGGATTCCTTTGAGGACCCTGCTAAGAAGACTCGCAAACCTTACACTATCACCAAGTCTAGGGAGAGTTGGACCGAACCTGAGCACGACAAGTTCCTCGAAGCTCTTCAATTATTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACAGTTATCCAGATACGTAGCCATGCTCAAAAATACTTTCTAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCTCCACCCAGGCCAAAAAGAAAAGCTGCTCATCCATATCCTCAGAAAGCTTCAAAAAATGCTCCAGTACTCTCACAAGTATCCGGATCCTTTCAATCTTCATCAGCTTTGCTTGAACCTGGATACATATTAAAGCTTGACTCTTCAGTAATACCTAAAACTCCTATTATTAACACTGCAGCGTCTTCCTGGTCAAACAACTCTCTGCAGAAAACCACCAACGTATTGCATGGTACTAAAGGGCAAAAAGTGAATAATTGTTGCAGTAGCAGTGAAAGTCCTAGAGCACAGTTGGTTGGTGAATCTAATGGTCAAGGGAATAATAGCCATCCATTGAGAGTTCTTCCGGATTTTTCTGAAGTATACAGCTTCATTGGCAGTGTATTTGATCCAAATGTAACTGGACATGTACAAAAACTAAAAAGGATGGACCCTATAGATGTTGAGACGGTGCTATTGTTGATGAGAAACCTTTCTATCAATTTAGCAAGCCCAGATTTTGAGGACCATAGAAGGCTTCTTGCATCATATGAGGTGGAACTTGAGATCGATAATTATATCAATGCAGATCGAACCATGCTTGATGTGCAGTTGAAGAGTGCTACTTAG 942 0.4342 MVSKNPNPSEAFYLDPSGMSLPGVLPFAAATSAADSFEDPAKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHLPPPRPKRKAAHPYPQKASKNAPVLSQVSGSFQSSSALLEPGYILKLDSSVIPKTPIINTAASSWSNNSLQKTTNVLHGTKGQKVNNCCSSSESPRAQLVGESNGQGNNSHPLRVLPDFSEVYSFIGSVFDPNVTGHVQKLKRMDPIDVETVLLLMRNLSINLASPDFEDHRRLLASYEVELEIDNYINADRTMLDVQLKSAT 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01008 313 PANTHER SWI/SNF COMPLEX-RELATED 33 274 - -
Pumo3g01008 313 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Pumo3g01008 313 ProSiteProfiles Myb-like domain profile. 49 99 IPR001005 -
Pumo3g01008 313 SMART sant 53 101 IPR001005 -
Pumo3g01008 313 Pfam Myb-like DNA-binding domain 54 99 IPR001005 -
Pumo3g01008 313 MobiDBLite consensus disorder prediction 104 136 - -
Pumo3g01008 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 103 IPR017930 -
Pumo3g01008 313 CDD SANT 56 99 IPR001005 -
Pumo3g01008 313 FunFam protein REVEILLE 6 isoform X1 56 104 - -
Pumo3g01008 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 52 101 IPR006447 GO:0003677
Pumo3g01008 313 ProSiteProfiles SANT domain profile. 52 103 IPR017884 -
Pumo3g01008 313 Gene3D - 57 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01008 Pumo-Chr3 15564832 15570111 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo3g01008 Myb_DNA-binding 3.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01008 - - gmx:100794389 553.132