Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01005 ATGGCTGAGGACTGGGATCTCTTTGCCATCGTGAGAAGCTGCTCAGCCACCAATACTGCCACCGCAACCATTCCACAAACCACCACCAACACTTCCTCTTCCTTGGTCACTTCCACTATCAAGGAAGAAAAATATGATGCATTTTCCTTTCCCAGTACAGTGCAACCAGTAACCAATGAGTTTCAAGAGCTAAACCAATTGTTCACACCCTTTAACCCCACCACCACCAACACCAACACCAACATCACTAACACTAGTGCTCCTGGCATCAATCCGAATTCCCCTTATTTTGCAGAACAGGAAAGGCAGCAAATTAGTGACCACCTTCCTATTTGGCCTCATGTTGTGCCAGAACCCTCCTCCACTCCCAGTTTCAACAGATTCCATGATCACCACCAACAACAGCAACAACAGATCAATCAACTACAGGTACTTGACAAACACGAATTTCAACTACCCCAGAACAATTCCCCCACAGTTTCACCAAACACACAACCTCCAACACCCAAATCAAGAAAAAGAAAAAGCCAACAGAAGAAAATGGTGTGCCACGTAACCGCAGATAACCTCTCAGCAGATTTGTGGGCATGGCGAAAATATGGACAAAAACCAATTAAGGGTTCTCCATATCCAAGGAACTACTATAGGTGCAGCAGTTCCAAAGGTTGTATGGCTCGAAAACAAGTTGAACAGAGTAACACTGAACCCGACATGTTCATCGTTACGTACACCGGCGACCACTCGCATCCACGTCCCACTCACCGGAACTCGCTCGCCGGAAGCACCCGGAGCAAGACTCCGGCGACGAATCCGCCGCCGTCACCGGGGTCACTCTCCTCCTTCCAAGCCACCCCTTTTTCTTCTTCTTCTTCGCCGCCGCACTCTCCGGCGTCGCCGTCGGAGGAGCCACCGGAGACCGGCGATGTAGAACCCGACCCGGAAATGGAAACCGACGTGGACGATGACGGTGACATTCGGTAA 981 0.5005 MAEDWDLFAIVRSCSATNTATATIPQTTTNTSSSLVTSTIKEEKYDAFSFPSTVQPVTNEFQELNQLFTPFNPTTTNTNTNITNTSAPGINPNSPYFAEQERQQISDHLPIWPHVVPEPSSTPSFNRFHDHHQQQQQQINQLQVLDKHEFQLPQNNSPTVSPNTQPPTPKSRKRKSQQKKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCMARKQVEQSNTEPDMFIVTYTGDHSHPRPTHRNSLAGSTRSKTPATNPPPSPGSLSSFQATPFSSSSSPPHSPASPSEEPPETGDVEPDPEMETDVDDDGDIR 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01005 326 SMART WRKY_cls 191 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo3g01005 326 MobiDBLite consensus disorder prediction 115 139 - -
Pumo3g01005 326 MobiDBLite consensus disorder prediction 119 139 - -
Pumo3g01005 326 MobiDBLite consensus disorder prediction 275 295 - -
Pumo3g01005 326 SUPERFAMILY WRKY DNA-binding domain 186 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo3g01005 326 Gene3D WRKY domain 174 245 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo3g01005 326 ProSiteProfiles WRKY domain profile. 186 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo3g01005 326 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 308 IPR044810 GO:0003700
Pumo3g01005 326 MobiDBLite consensus disorder prediction 305 326 - -
Pumo3g01005 326 MobiDBLite consensus disorder prediction 242 326 - -
Pumo3g01005 326 Pfam WRKY DNA -binding domain 193 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo3g01005 326 FunFam WRKY transcription factor 22 174 245 - -
Pumo3g01005 326 MobiDBLite consensus disorder prediction 152 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01005 Pumo-Chr3 15467625 15468808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01005 170 275 WRKY Transcription Factor Family AT5G52830 78.302 5.98e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo3g01005 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01005 - - gmx:100792164 474.552