Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo3g01002 | ATGGCTTCCGATCTTGAGCTTAAGGCCAAAGAGGCTTTCGAAGACGATAACTATGATCTCGCCATCGACCTCTTAACCCAGGCCATTGGTCTCAGCCCCAACAACGCAGACCTATATGCTGACCGTGCCCAAGTCAACATCAAAGTCAACAACCTCACCGAGGCTGTTGCTGATGCAAACAAGGCGATTGAGTTGAATCCTTCTCACTCAAAAGCATATTTGCGCAAAGGTACTGCATTCATCAAGCTTGAAGAATATCAGACTGCTAAAGCAGCTCTAGAGATGGGTGCTTCATTGGCTCCAGGAGACTCTAAATTTACTGATTTGATCACAGAGTGTGATGAGCTGATTGCAGAAGAATCGGGTGTCATACCCATAGAAGAAGACGAGAACACAACACAGGGTGATTCTACAAAAGCTGTTGAGCCAGAGAATGATCTTCCAGAGCCACCTACAGTAACAGTGGTTAAACCTAAATACAGGCATGAATTCTACCAGAAACCTGATGAGGTGGTTATTACCATATTTGCCAAGGGCATTCCACGAGACAGCATTACTGTTGACTTTGGTGAACAAATACTAAGTGTTACAATTAATATCCCTGGCGAAGATGCATATGTCTTCCAATCTCGCTTATTTGGAAAGATCATACCCACCAAATGCCGGTATGAAGTTATGTCCACCAAAATTGAAATTCGCCTTGCGAAAACAGAACATATCCAATGGACATCTCTAGAATTCAACAAGGGTACCACAGTACCACAGCAGGTTAATGTTTTGCCAGTTGCTGGAGCTGAAAGACCTACTTATCCATCCTCAAAACCAAAAAGAACAGATTGGGATAAGCTGGAAGCTCAAGTCAAGAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCCTTGAACAAATTTTTCCGCTGA | 924 | 0.434 | MASDLELKAKEAFEDDNYDLAIDLLTQAIGLSPNNADLYADRAQVNIKVNNLTEAVADANKAIELNPSHSKAYLRKGTAFIKLEEYQTAKAALEMGASLAPGDSKFTDLITECDELIAEESGVIPIEEDENTTQGDSTKAVEPENDLPEPPTVTVVKPKYRHEFYQKPDEVVITIFAKGIPRDSITVDFGEQILSVTINIPGEDAYVFQSRLFGKIIPTKCRYEVMSTKIEIRLAKTEHIQWTSLEFNKGTTVPQQVNVLPVAGAERPTYPSSKPKRTDWDKLEAQVKKEEKEEKLDGDAALNKFFR | 307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo3g01002 | 307 | CDD | p23_CS_SGT1_like | 163 | 246 | - | - | |
| Pumo3g01002 | 307 | SUPERFAMILY | TPR-like | 5 | 110 | IPR011990 | GO:0005515 | |
| Pumo3g01002 | 307 | ProSiteProfiles | SGS domain profile. | 269 | 307 | IPR007699 | - | |
| Pumo3g01002 | 307 | SMART | tpr_5 | 36 | 69 | IPR019734 | GO:0005515 | |
| Pumo3g01002 | 307 | SMART | tpr_5 | 2 | 35 | IPR019734 | GO:0005515 | |
| Pumo3g01002 | 307 | SMART | tpr_5 | 70 | 103 | IPR019734 | GO:0005515 | |
| Pumo3g01002 | 307 | ProSiteProfiles | CS domain profile. | 157 | 246 | IPR007052 | - | |
| Pumo3g01002 | 307 | Pfam | Tetratricopeptide repeat | 13 | 57 | - | - | |
| Pumo3g01002 | 307 | MobiDBLite | consensus disorder prediction | 129 | 150 | - | - | |
| Pumo3g01002 | 307 | Gene3D | - | 158 | 249 | IPR008978 | - | |
| Pumo3g01002 | 307 | Gene3D | Tetratricopeptide repeat domain | 1 | 145 | IPR011990 | GO:0005515 | |
| Pumo3g01002 | 307 | FunFam | Protein SGT1 homolog A | 158 | 249 | - | - | |
| Pumo3g01002 | 307 | Pfam | CS domain | 161 | 236 | IPR007052 | - | |
| Pumo3g01002 | 307 | SUPERFAMILY | HSP20-like chaperones | 149 | 254 | IPR008978 | - | |
| Pumo3g01002 | 307 | Pfam | Tetratricopeptide repeat | 71 | 101 | IPR019734 | GO:0005515 | |
| Pumo3g01002 | 307 | PANTHER | PROTEIN SGT1 HOMOLOG | 1 | 307 | IPR044563 | GO:0051087 | |
| Pumo3g01002 | 307 | ProSiteProfiles | TPR repeat profile. | 36 | 69 | IPR019734 | GO:0005515 | |
| Pumo3g01002 | 307 | ProSiteProfiles | TPR repeat profile. | 70 | 103 | IPR019734 | GO:0005515 | |
| Pumo3g01002 | 307 | Coils | Coil | 42 | 62 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo3g01002 | Pumo-Chr3 | 15457654 | 15461682 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo3g01002 | 1 | 101 | U-box Gene Family | AT3G07370 | 30.476 | 4.31e-08 | 51.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo3g01002 | K12795 | - | gmx:100777554 | 530.406 |