Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01000 ATGGAAGACCACTCAGAATCCCCACCACCACAACCACAACCACAACCATCCCTAATAAAAACCTACAAACTAACAGCCACCTCAATCTCCTACACCAAATCCACCTCCACCACCAAACCCTCATTATTCTTCACCCCATGCACCACCACCTCCCCAGCCTACATCCTCAAAGACGTCTCCCTCACCGCCCTCCCCTCCCAAATCCTGGCCGTGGTGGGCCCCAGCGGTGCCGGCAAGTCCACCCTCCTCGACATCCTCGCCGCCCGTACCCTCCCCTCCCACGGCACTCTCCTCCTCAACTCCTCCCCTCTCGTCCCCTCCACTTTCCGCAAACTCTCCTCCTACGTCCCCCAACACGACCACTCCCTCCCTCTCCTCACCGTCTCTGAAACCTTCCTCTTCGCCGCCAAACTCCTCAAACCCAAAACCCCTAACCTCCCCTCCATCGTCTCCTCTCTTCTCTCCCAACTCCGACTCACGCACCTCGCCCACACGCGCCTCGCGCGTGGCCTCTCCGGCGGAGAACGCAGAAGGGTCTCCATTGGCCTCAGTCTCCTCCACGATCCCGCGGTCTTACTCCTTGATGAACCCACTTCGGGGCTTGATAGCACTTCGGCCTTCAAAGTCATGCAAATTCTGAAACAAACGTGCGTCTCTCGCAACAGAACTATTATTCTCTCCATCCACCAACCCAGCTTCAAGATCCTCGCTTGCATTGATAGGATCTTGTTGCTTAACAAAGGGACCGTGGTTCATCATGGAAGCATTGCCACGTTGCAAGCGTTCTTGCACTCGAACGGCTTCACCGTCCCTCACCAACTCAACGCGTTGGAATATGCTATGGAGATTCTGAGCCAGTTGAATGAGGTGAAGCCTCTCACTCCACCGAGTATTCCTGAATCACCTGAGAGTTCAAGTTCAAGTTCAGGTTCAGCAAGTTCGGTTTCTGAGGGTGCAGTTAAGAGTAGTAGAGAGATGATCACGTATAAAAGCTCTAGGGTGCATGAGATTTTCACTCTTTATAGCAGGTTTTGGAAGATTATTTACAGAACTAGACAACTTCTTTTGACCAACACAGCTGAAGCACTTCTCGTGGGTCTTGTGTTGGGAACTATTTATATCAATATAGGGTTTGATAAAGAAGGGATTGAGAAAAGGTTTGGTCTCTTTGCCTTCACTCTCACGTTTCTATTATCCTCCACAACGGAAACCCTTCCCATCTTCATCAACGAGAGACCAATCTTGTTGAGAGAAACTTCCAGTGGGGTTTATAGGCTTTCGTCTTATCTCATTGCAAACACGCTTGTTTTCTTGCCCTACTTGTTCGTTGTTGCTGTCATATACTCTATTCCGGTTTACTTCTTGGTGGGTCTTTGTGCTTCGTGGCTTTCTTTTGCTTACTTTGTTTTGGTCATTTGGGTCATTGTTCTCATGGCGAACTCGTTCGTTCTCTTCTTGAGCTCTCTTGCACCGAACTACATTGCTGGGACTTCGCTCCTAACGGTGCTTCTAGCAGCGTTTTTTCTCTTCTCTGGATACTTTATCTCCAAGGAAAGCTTGCCCAAGTACTGGCTCTTCATGCATTTTTTCTCTATGTATAAATACGCTCTTGATGCTCTTCTCATCAACGAGTACTCGTGCTTGGTGACGAGGTGTTTGATATGGTACCAAGAGAATGAACAGTGCATGGTGACTGGTGGTGACGTGTTACAGAAGAGAGGGCTCAAAGAGAGTGAAAGGTGGACCAACGTGTACTTCTTGATCGGGTTCTTTGTGCTGTATCGTGTGCTTTGCTTCTTGGTTTTGCTTAGAAGGGTTTCGGGATCCAAAACATGA 1836 0.494 MEDHSESPPPQPQPQPSLIKTYKLTATSISYTKSTSTTKPSLFFTPCTTTSPAYILKDVSLTALPSQILAVVGPSGAGKSTLLDILAARTLPSHGTLLLNSSPLVPSTFRKLSSYVPQHDHSLPLLTVSETFLFAAKLLKPKTPNLPSIVSSLLSQLRLTHLAHTRLARGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFKVMQILKQTCVSRNRTIILSIHQPSFKILACIDRILLLNKGTVVHHGSIATLQAFLHSNGFTVPHQLNALEYAMEILSQLNEVKPLTPPSIPESPESSSSSSGSASSVSEGAVKSSREMITYKSSRVHEIFTLYSRFWKIIYRTRQLLLTNTAEALLVGLVLGTIYINIGFDKEGIEKRFGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLFVVAVIYSIPVYFLVGLCASWLSFAYFVLVIWVIVLMANSFVLFLSSLAPNYIAGTSLLTVLLAAFFLFSGYFISKESLPKYWLFMHFFSMYKYALDALLINEYSCLVTRCLIWYQENEQCMVTGGDVLQKRGLKESERWTNVYFLIGFFVLYRVLCFLVLLRRVSGSKT 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01000 611 MobiDBLite consensus disorder prediction 293 317 - -
Pumo3g01000 611 ProSitePatterns ABC transporters family signature. 171 185 IPR017871 GO:0005524|GO:0016887
Pumo3g01000 611 Pfam ABC transporter 56 199 IPR003439 GO:0005524
Pumo3g01000 611 MobiDBLite consensus disorder prediction 300 317 - -
Pumo3g01000 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 263 IPR027417 -
Pumo3g01000 611 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 37 272 IPR003439 GO:0005524
Pumo3g01000 611 Pfam ABC-2 type transporter 229 289 IPR043926 GO:0140359
Pumo3g01000 611 Gene3D - 28 291 IPR027417 -
Pumo3g01000 611 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 596 - -
Pumo3g01000 611 FunFam ATP-binding cassette transporter 46 265 - -
Pumo3g01000 611 SMART AAA_5 65 249 IPR003593 GO:0016887
Pumo3g01000 611 Pfam ABC-2 type transporter 336 545 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01000 Pumo-Chr3 15414996 15417051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01000 55 255 Calmodulin-binding Proteins AT2G36910 30.233 7.27e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01000 K05681 - gmx:100790712 966.452