Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00996 ATGGAACAGAAACACGTGCTGTTGTCAGCATTGAGTGTTGGGGTTGGATTGGGTGTGGGACTTGGATTGAGCACAGGACAAGCTGTTCAAAAATGGGTTGGAGGGAGTTGTGAGTCTGATGAGATTTCTGGGGAGCAAATTGTGTTGGACCTCAACAACAGAGTCATTGATGGGAAGAGCAGCGAAGTCACATTTGATGTCTTTCCTTATTGCTTAAGTGAAAGAATCCGATTTTTGTTAACAAGTACTGGATATGTTTATTTAAAACAAGACTTTTCCAAGCACTTGAGGAACCTTCGTCCAGCAAGCAGAGCTATTTTGCTTTCTGGACCTGCAGAACCTTATCACCAAAATCTTGCCCGAGCTTTAGCACATTACTTTGAATCGAAGTTACTGTTGCTAGACATTACTGACTTCTCGTTGGAGATGCAGAGGAAATATGGATGTCCCAGAAAAGGACCATATTTTAAAAGGTCCATATCGGAGGTGACTTTGGAGCGAGTGTCTGGTTATTTTGGTTCCTTGTCAGTCCTTCCTTCAACAGGCAGAACTAGAGGTACACTACGTCGACAGAGTAGTGGAATTGAAAATTCGAGCAATCCTCCAAAGCTTCGTAGGAATGCCTCTACTGCATGTGATACAATTAGCACTCCATCAGATCCAGCTCCTTTGAAGTGCACAAGCAGCTTCTGTTTTGATGAAAAGCTCTTCATGCAGTCACTTTATAAGGTCTTGGTTTCTATCTCAGAAACCAGTTCCATTATTTTATACATCAAGGATGTTGAGAAGCTCTTTGTTCGATCACCTAGGCTACACAATTTGTTCCAAAAGTTAATAAAGAAACTTTCAGGATCAGTGTTAATACTCGGTTCCCTGATCTTTGATTCTGAAGATAATTGTACAGAAATTGATGAAAAGCTTACTATGTTATTCCCTTACAACATTGAGATCAAACCACCTCAAGATGAGACATTGAAAACCAAACTGAAAGAGGACATGGAAAATATTGTGTTTCGAGATAGCAGAAACCACATTGCTGAAGTTCTTGCAGCAAATGACATTGATTGTGATGACTTGGAAAAAGTCCACCATGCCGACACTGTGCTACTCAGTAATTGCATTGAAGAGATTGTGGCGTCTGCAATTTCTCACCACCTGATGGAGAATAAATGTCCAGAATACCGAAATCGAAAACTAGTTATATCAGCCAAGAGTTTGTCCCATGTATTGAGTCTGTTCCAGGAAAGTGAAAGTAATTCAGAGAATAAAGATTCAAACAAGGACGATGCTCCTGCAACAGAGAAAGATGGCAACAATAATGCTCCTGCAAAGGATGTTCCTCCTGACAATGAGTTTGAGAAGCGCATGAGAGCAGGGCTTGTGCCTGCAAATGAGATAGGGGTTACATTTGCAGATATTGGAGCATTGGATGATATTAAAGAATTACTTCAAGATGTAGTCATGCTTCCCCTTAGAAAACCAGACTTATTCAAAGGTGGGCTTCTGAAGCCTTATAAAGGTATATTGCTTTTTGGGCCCCCTGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATTAATGTCACAACATCTAGCATCACTTCAAAATGGTCTGGAGAAGATGAAAAGAATGTCCGAGCTCTATTTTCACTAGCAGCAAAGGTTGCTCCAACTATTATTTTTATTGATGAGGTTGATGGCATGCTTGGGCAGCAGACTAAATTAGGAGAGCATGTGGCAATGAGAGAGATTAAAAATGAATTCATAGCCAACTGGGATGGGCTATTGTCGAAACCTGGCAAGCAAATTCTGGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAAGTAATTATAAGACGGTTTGAGCGCAGGATCATGGTTGGTCTACCATCTGCTGAGAGCAGGGAAATGATATTGAAAACTCTCCTAGCTAAGGAAAAATATGAAAATATAGACTTTAAAGAGCTTTCAACCATGACAGAAGGATATACTGGAAGTGATCTTAAGGTTCATTTTGTTGATTATTTTAATTCCTTACTTCTAGTTCGTGATGATTTATTGACCTTCTGA 2100 0.4033 MEQKHVLLSALSVGVGLGVGLGLSTGQAVQKWVGGSCESDEISGEQIVLDLNNRVIDGKSSEVTFDVFPYCLSERIRFLLTSTGYVYLKQDFSKHLRNLRPASRAILLSGPAEPYHQNLARALAHYFESKLLLLDITDFSLEMQRKYGCPRKGPYFKRSISEVTLERVSGYFGSLSVLPSTGRTRGTLRRQSSGIENSSNPPKLRRNASTACDTISTPSDPAPLKCTSSFCFDEKLFMQSLYKVLVSISETSSIILYIKDVEKLFVRSPRLHNLFQKLIKKLSGSVLILGSLIFDSEDNCTEIDEKLTMLFPYNIEIKPPQDETLKTKLKEDMENIVFRDSRNHIAEVLAANDIDCDDLEKVHHADTVLLSNCIEEIVASAISHHLMENKCPEYRNRKLVISAKSLSHVLSLFQESESNSENKDSNKDDAPATEKDGNNNAPAKDVPPDNEFEKRMRAGLVPANEIGVTFADIGALDDIKELLQDVVMLPLRKPDLFKGGLLKPYKGILLFGPPGTGKTMLAKAIANEAGASFINVTTSSITSKWSGEDEKNVRALFSLAAKVAPTIIFIDEVDGMLGQQTKLGEHVAMREIKNEFIANWDGLLSKPGKQILVLAATNRPFDLDEVIIRRFERRIMVGLPSAESREMILKTLLAKEKYENIDFKELSTMTEGYTGSDLKVHFVDYFNSLLLVRDDLLTF 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00996 699 Pfam ATPase family associated with various cellular activities (AAA) 508 638 IPR003959 GO:0005524|GO:0016887
Pumo3g00996 699 SMART AAA_5 504 641 IPR003593 GO:0016887
Pumo3g00996 699 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 467 642 - -
Pumo3g00996 699 MobiDBLite consensus disorder prediction 183 212 - -
Pumo3g00996 699 Gene3D - 467 639 IPR027417 -
Pumo3g00996 699 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 50 680 - -
Pumo3g00996 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 680 IPR027417 -
Pumo3g00996 699 MobiDBLite consensus disorder prediction 420 434 - -
Pumo3g00996 699 Gene3D - 640 679 - -
Pumo3g00996 699 MobiDBLite consensus disorder prediction 414 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00996 Pumo-Chr3 15284164 15346700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00996 468 680 Calmodulin-binding Proteins AT3G56690 39.631 3.86e-40 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00996 - - gmx:100793760 1123.23