Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00993 ATGGAACAGAAACACGTGTTGTTGTCAGCATTGAGTGTTGGGGTTGGATTGGGTGTGGGACTTGGATTGAGCACAGGACAGGCTGTTCAAAAATGGGTTGGAGGGAGTTGTGAGTCTAATGAGATTTCTGGGGAGCAAATTGTGTTGGAGCTCAACAACGAAGTGATTGATGGGAAGAACAGCGAAGTCACATTTGATGACTTTCCTTATTACTTAAGTATAATAATCCTGGCGGGTCAAATATACGGTTCACCTCTCATATCCTCACCTCACCGCTACTACTTTGTCAACCCCAATCTTCCTTTGATCTTCTGGTGGCATAGTTGTTCTTGGCTTTTCAATGTTCCAACAATTGTACCCTACATCAGATCAGTCACCATGTTCTGGGTACTAAATGAGTTTTTAGTAAGGAAAAACATCTCCAAGCACATGAGGAACCTTTCTCCAGCAAGCAGAGCTATTTTGCTTTCTGGACCTGCAGAACTTTATCAGCAAAAGCTCGCCAAAGCTTTAGCACATTACTTTGAATCAAAGTTACTGTTGCTAGACATTACTGACTTCTCGTTGAAGGTATATTTTAAAAGGTCCATATCTGAGGTGACTATGGAGCGAGTTTCTGGTTTGTTTGGTTCCTTGTCAGTCCTTCCTTCAACAGGCAGAATTAGAGGTACACTACGTCGACAGAGTAGTGGAACTGAAAATTCCAGCAATCCTCCAAAGCTTCGTAGGAATGCCACTACTGCATGTGATACGATTAGCACTTCCGAATATGGTCCATCTGATCCAGCTCCTTTGAAGTGCACAAGCGGCTTCTGTTTTGATGAAAAGCTCTTTGTGCAGTCACTTTATAAGGTCTTGGTTTCTATCTCAGAAACCAGTTCCGTTATTTTATACATCAAGGATGTCGAGAAGCTCTTTGTTCGATCACCAAGGCTACACAATTTGTTCCAAAATTTAATAAAGAAACTTTCAGGATCAGTGTTAATACTCGGTTCCCAGATCTTTGATTCTGCAGATGATTGCACAGAAATTGATGAAAAGCTTACTATGTTATTCCCTTACAATATTGAGATCAAACCACCTCAAGATGAGACCCATCTTGCCAAACTGAAAAAGGAGATGGAAACAATTCTGTTTCAGGATAGCAGGAACCACATTGCTGAAGTACTTGCAGCAAATGACATTGATTGTGATGACTTGGAAAAAGTCCACCATGCTGACACTATGCTACTCAGTAATTGCATTGAAGAGATTGTGGCTTTGTGCCATGTATTGAGTCTGTTCCAGGAAAGTGAAAGTAATCCAGAGAATAAAGATTCAAACAAGGACGATGCTCCCGCAACAAAGAAAGATGGCGACAATAATGCTCCTGACAATGAGTTTGAGAAGCGCATGAGAGCAGAAGTTGTGCCTGCAAATGAGATAGGGGTTACATTTGAAGATATTGGTGCATTGGATGATATTAAAGAATTACTTCAAGATGTGGTCATGCTTCCCCTCAGAAGGCCAGACTTATTCAAAGGTGGGCTTCTGAAGCCTTATAAAGGAATATTGCTTTTTGGGCCTCCCGGTACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAACGAAGCTGGAGCAAGTTTCATTAATGTCTCAATCTCTAATATCACTTCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTGTTTTCACTAGCAGCAAAGGTTGCTCCAACTATTATTTTTATTGATGAGATTGATAGCATGCTTGGGCAGTGGACTAAATATGGAGAGCATGAGGCAATGAGAAAGATTAAAAATGAATTCATGGCCCCCTGGCCATTTGACCTTGATGAAGCAATTATAAGACGGTTTGAGCGCAGAAGGATCATGGTTGGTCTTCCATCCGCTGAGAACAGGGAAATGATATTGAAAACTCTCCTAGCTAAAGAAAAATATGAAAATATAGACTTTAAAGAGCTTTCCACCATGACAGAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCACGGCTGCTGCTTATCGACCTGTTAGAGAGCTACTACAACAGGAGAGGTTGAAGGAAAAGGAAAAGAAGAAAACGGAGGCAGAAGTTCAAAGATCAGAAAATGCTTCTGATGCAAAAAGTGATAAAGACGACCAAGTGATTACTTTGAGGCCTTTAAACATGGAAGACATGAGACAGGCAAAGAGTCAGACACAAGTAATTTATGCCAGTTTTGAACTTCAAAAAATGAACCACCAGAAAACGTAA 2265 0.4071 MEQKHVLLSALSVGVGLGVGLGLSTGQAVQKWVGGSCESNEISGEQIVLELNNEVIDGKNSEVTFDDFPYYLSIIILAGQIYGSPLISSPHRYYFVNPNLPLIFWWHSCSWLFNVPTIVPYIRSVTMFWVLNEFLVRKNISKHMRNLSPASRAILLSGPAELYQQKLAKALAHYFESKLLLLDITDFSLKVYFKRSISEVTMERVSGLFGSLSVLPSTGRIRGTLRRQSSGTENSSNPPKLRRNATTACDTISTSEYGPSDPAPLKCTSGFCFDEKLFVQSLYKVLVSISETSSVILYIKDVEKLFVRSPRLHNLFQNLIKKLSGSVLILGSQIFDSADDCTEIDEKLTMLFPYNIEIKPPQDETHLAKLKKEMETILFQDSRNHIAEVLAANDIDCDDLEKVHHADTMLLSNCIEEIVALCHVLSLFQESESNPENKDSNKDDAPATKKDGDNNAPDNEFEKRMRAEVVPANEIGVTFEDIGALDDIKELLQDVVMLPLRRPDLFKGGLLKPYKGILLFGPPGTGKTMLAKAIANEAGASFINVSISNITSKWFGEDEKNVRALFSLAAKVAPTIIFIDEIDSMLGQWTKYGEHEAMRKIKNEFMAPWPFDLDEAIIRRFERRRIMVGLPSAENREMILKTLLAKEKYENIDFKELSTMTEGYTGSDLKNLCTAAAYRPVRELLQQERLKEKEKKKTEAEVQRSENASDAKSDKDDQVITLRPLNMEDMRQAKSQTQVIYASFELQKMNHQKT 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00993 754 SMART AAA_5 513 632 IPR003593 GO:0016887
Pumo3g00993 754 Pfam ATPase family associated with various cellular activities (AAA) 517 606 IPR003959 GO:0005524|GO:0016887
Pumo3g00993 754 MobiDBLite consensus disorder prediction 223 245 - -
Pumo3g00993 754 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 50 748 - -
Pumo3g00993 754 MobiDBLite consensus disorder prediction 690 728 - -
Pumo3g00993 754 Gene3D - 610 631 IPR027417 -
Pumo3g00993 754 MobiDBLite consensus disorder prediction 435 460 - -
Pumo3g00993 754 MobiDBLite consensus disorder prediction 432 460 - -
Pumo3g00993 754 Coils Coil 681 708 - -
Pumo3g00993 754 Gene3D - 477 608 IPR027417 -
Pumo3g00993 754 Pfam AAA+ lid domain 651 687 IPR041569 -
Pumo3g00993 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 701 IPR027417 -
Pumo3g00993 754 Gene3D - 632 737 - -
Pumo3g00993 754 MobiDBLite consensus disorder prediction 690 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00993 Pumo-Chr3 15230729 15237459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00993 477 741 Calmodulin-binding Proteins AT3G56690 32.753 3.81e-36 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00993 - - gmx:100793760 1062.37