Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00967 ATGCCAGTTGCAAAACTCCCGGCCTCTGGCACAACCGATATCAAGAAAACAGATGATGGAAATGATTCTTTAGATACAATAATCAGACAAGCAATTGGAAAAGAACCTTTGCTTTCCTTTCCTAGGGCCGGTGACAGCCCAGTACAGTGGATTCAATTACTTAATGCTTTAGATCAGCAAGAACTTCCAGGGTGGCCTTTGCTCTCTCCTGTGAAGGTTCAGTTACAAAAGTGCAACAAGTGTTCTCGAGAATTTTGCTCTCCCATTAACTATAGAAGGCATATACGCGTACAGCATCGGCTGAAAAAGCTTGATAAGGATTCTAAAAAAAATAGGGATCTTTTAGGGGCATACTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAGTTGCGTCATTCAAGAATGTGATGCTGGAGGAAGTTCCAGGGTCTTCAATTTTAGAAGCTTTGACAACTCTTAGAAAACAAGGATTTTCTTCTCTTCCACAATATTATCTGAGGGCTGGTTCTGCCCTTTTGAATATTGTTCAATCCAGGCCTTCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTAGATGATTCTAGTGAAAAAACATTTTTGGTTGGATCAGCAGTGTCAATGCAAAGATATGTTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAACTGGTGAAAGCCTGGCTTGCTGACAAGGATGCTGAAGCATTGAGATGCCAGAAGCTGCTGGTGGAGGAGGAGGAAGCTGCTCAGAAAAGAAAAGCTGAAATTTTAGAGAGGAAACGCCAGAAAAAGCTTAGACAGAAAGAACACAAGGCAAGGGAACGACTCGAAGATGACACAGAAATTAAAGAGAACATAAGCAGCGCAGGAGAGGATATTTCACCAGCTGAAGCATCTTCTGGTACATGTGACTTTGAAGCACATAATCCAGATATATTTGCGGAATATTCTCCTCCACCACATGTAACTTCTCACTGCCTAGACACTAATGAAGTTATGGAAGGGGATACACTGTCAGGGTATGATTGTGACACTGATCTGTATATAGAGCGACAGACATCACGAGGACATAATCGCCGGCGCATAATGGCTGCCAGATGGCAAGGGCTGTCAAAATCACAATGGGCCAAAGCCAATGGTTCACATGCAGGCCAAAATTCTCAAATGAAGCTTGGAGTCATTCAAAAACATGGAACCAACCGTGATCAAAGGGCAGCTCCTATAGTTAATGGTAGTAAGGTTTGGAGCCGAAAACCTAAACCAGAAACTAATGGGGTGGTTTTAAAAGCCAAACTGCAGAAAGAACCAGATAAAGGTAAGAATCATGAAGTTTTGATAGGATCTGTATCAGTTAGTCTGGGTAATTGCAGCCATTCAGAAGGGAATTTGGTGGCACCCCAGCGGGACTGCTTGGTAAAGAATTCAGCCAAGCAGAATACTGCTCAGGAGAAGCCAGTGAAACATGATTCCTCTCAGGGAATCAATGGTCGGTTAACGGTTAAGCTTTGGAGGCCGGTTAGCCAGCATGGAACTAAAGATCCATTGCCACTTCAAAATGGTGGGACAGAAGCTGATGTAATTAATGGGAAATATGATCAAAATTTGCCAGGTCAAAGTAGTTTAAGGTTGTGTAGTATAGATGGTAGTGATATTGGTTTTTGGGACAATTTTTCCCACACTGGGGCTAAAGTAGATTCAGAAAGCTTACGTCTATCCAGTCACGCTGCAAAAGCCTTTCTTGCACAAAGATGGAAAGAAGCTATCTCATCAAACCATGTGAAATTGGTTGTTACACCTGATTGTCTATCTTATAATGCGGACAGATGTAGCATTCTTGAAAATACAGAGAACCGATTGTCTGCAACCTCCGGAGTTGCTAAATCCAAACCCAAAACGAAGCCTGATAAGGGAATGAAGATAAAGTACATTCCCAAACAAAAAGCAGCAACCTAA 2007 0.422 MPVAKLPASGTTDIKKTDDGNDSLDTIIRQAIGKEPLLSFPRAGDSPVQWIQLLNALDQQELPGWPLLSPVKVQLQKCNKCSREFCSPINYRRHIRVQHRLKKLDKDSKKNRDLLGAYWDKLSVEEAKEVASFKNVMLEEVPGSSILEALTTLRKQGFSSLPQYYLRAGSALLNIVQSRPSSFPISSQELFSILDDSSEKTFLVGSAVSMQRYVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKLLVEEEEAAQKRKAEILERKRQKKLRQKEHKARERLEDDTEIKENISSAGEDISPAEASSGTCDFEAHNPDIFAEYSPPPHVTSHCLDTNEVMEGDTLSGYDCDTDLYIERQTSRGHNRRRIMAARWQGLSKSQWAKANGSHAGQNSQMKLGVIQKHGTNRDQRAAPIVNGSKVWSRKPKPETNGVVLKAKLQKEPDKGKNHEVLIGSVSVSLGNCSHSEGNLVAPQRDCLVKNSAKQNTAQEKPVKHDSSQGINGRLTVKLWRPVSQHGTKDPLPLQNGGTEADVINGKYDQNLPGQSSLRLCSIDGSDIGFWDNFSHTGAKVDSESLRLSSHAAKAFLAQRWKEAISSNHVKLVVTPDCLSYNADRCSILENTENRLSATSGVAKSKPKTKPDKGMKIKYIPKQKAAT 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00967 668 MobiDBLite consensus disorder prediction 288 304 - -
Pumo3g00967 668 Coils Coil 272 292 - -
Pumo3g00967 668 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Pumo3g00967 668 MobiDBLite consensus disorder prediction 1 20 - -
Pumo3g00967 668 MobiDBLite consensus disorder prediction 278 319 - -
Pumo3g00967 668 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 104 IPR013087 -
Pumo3g00967 668 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 667 - -
Pumo3g00967 668 MobiDBLite consensus disorder prediction 640 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00967 Pumo-Chr3 14838572 14843973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00967 19 665 C2H2 Transcription Factor Family AT4G25610 45.579 9.67e-156 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g00967 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00967 - - gmx:100799153 1221.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00967 3 14838572 14843973 Pumo3g00967 3 14838572 14843973 ECH
Pumo6g02561 6 59979387 59989766 Pumo3g00967 3 14838572 14843973 PCT