Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00959 ATGTCAGAATCTGAGGAAGAAAATCCAGACTATGTTCCCAGGTCAAAGCCAGCAGCAGAGGAAGGTGGCTGCACCATGGACATCGATCTGGACTTAGAAACTTCATGGCCTTTGGATCACATGGCCTTTGGCTCCAACCCCATGTCACCTTTTCTCTTCTCCACTTCCTCTGACCAACCTTACTCTCCTCTTTGGGCTTTCTCTGATGGAGAAGACCCCAAGCTTCCAGCTTCTGCCTTCTCTGATTGCCACAAGATCTTCTCTTGTGATTCAAATTCAATGGCTGAAAAGCCAGTGGAGAATGACGACAACAAAAAACTTTTGCCACCACTTGTGCCTATGCCGCCAGTGGAAATTTTGGATGGTTATTGTGTAATCAAGGAAAGGATGACACAAGCACTTCGTTACTTCAAAGAGTTGACTGAATTGAATGTTCTGGCTCAAGTTTGGGCACCTGTGCGGAATGGTAATCGGTATGTGCTTACAACTTCAGGTCAACCCTTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACAGTCTCTCTGATGTACATGTTTTCTGTGGATGGGGAGAATGATGGAAGTTTGGGACTCCCTGGTCGGGTTTTTCAGCAGAAATTACCGGAATGGACTCCCAATGTTCTGTATTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTAAACATTACAATGTTCGTGGAACCTTGGCTTTGCCCGTGTTTGAACCTTCAATGCAGTCATGTGTTGGTGTACTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGACAGTAAATTTGAGGAGTTCGGAAATTTTGGACCATCCATACACTCAGATATGTAATGAAGGTCGTCTGAATGCATTATCAGAGATCTTGGAGATATTGACAGTGGTATGTGAAACTCATAATTTACCTCTGGCCCAGACATGGATTCCCTGTAAGCATCGAAGTGTTTTGGCCCAAGGTGGTGGTGTAAAGAAAAGTTGTTCTAGTTTTGATGGTAGTTGCATGGGGAAAGTTTGCATGTCTACAACTGACATAGCATTCTATATCATAGATGCTCATTTATGGGGTTTTCGTGAGGCCTGTGTTGAGCATCACTTACAACAAAGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCACAGCATGTGCTTCTGTTCAAACATTACCCAATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGGTTAAAAAGCTGTTTTGCAATATGTTTACGAAGCTCTCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGAGTCACAGACTCTCATGAACAAAAGACTTTGTTGGGATCCATATGGGCAACAATGAAACAACATTTCCAGAGTCTTAAGATTGCTTCTGGTGTTGAACTTGAGGATGGTTCAATTGAAATTATTGAAGCAACAATTGAAAGAGTTCATACGAGGCTTGAATCTATTCCAATTGCCCCATCTATTAAATCACCACCTAGACCTGATACCTCACCAAACATGGGGGAAGAAGTGCCACAGGATCCATCAGAACAACAAATATTGATGTACTGTAATGAAATCAATAATGGAGGGAGTCTTGGTAAAAACGCAGCCGGAAACATTGATTGTATGCCCTCCTTAGAGACTAAAAACATAAAGAAACCCTTAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTCTTGCAACGTTATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACCACAATGAAGCGCATCTGTAGGCAGCATGGCATATCCCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTGTCGAAGCTCAAGCGTGTTATTGAATCTGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTGAGCAAAAGTCCAATTCCCATTGCTGTTGGTTCCTTTCCTGAGCCTTCTACTCCAAACAAGTTCAGCCAGCCAGCCTCATTAAGCATTAAGCCACCAGAGCTTCAGATGAAAGAGAATGAATTGAATGCCTCCAAAGCATTAGAAACAAACAGACAGGCTGGAATGGAAGATCAATTGCTAGGAGGCTCACCACATCTTGAGAAAGTAACTAACGATAAAGGTGGGTATACTCAAGAGGTTGGGAAAGAATCAAAAAGGACTAGAACTGGGAGTGGCTCAAGTGAGGATAGCACAAATCCTACTTCTCATGGTTCATGCCATGACAGTCCCCCAAATGAAAGTTCACCTGTAAAGGATATTTTCATTACTTCCAACAATGATCAGAGTGCTGGGCTAAAGAGATCACCAGAGTCAACACTGCAGCCAACTTCTAATATGCCAAACCGGCCAACTGCTTACCCTATGCCCGACTTTGTTGCCACAGAACTTCAAGAGCCATTTGGAGGGATGCTAATAGAGGATGCTGGTAGCTCTAAAGACTTAAGAAATTTGTGTCCTTCAGTAGCTGAGGCCATTTTGGAGGATATAGTTCCAGAAGCTTGTGGGATTAATCTTCCAGGTCCAGATTTGTCTCCTAAGCAAAGCATGGGTACTCCTAATAAAGTAGTGACACCTTTTGCAGCTAAGAAAGAAATGAAGACCGTGACTATCAAGGCAACATACAGAGAAGATATCATAAGATTTCGGGTCTCGTTGACCTGTGGCATTGTCGAACTGAAAGAAGAAGTTGCCAAAAGATTGAAACTAGAGGTGGGTACATTTGATATTAAGTACCTGGATGATGATCACGAATGGGTTTTGATAGCCTGTGATGCAGACCTACAGGAGTGCATGGATGTTTCAAGATCATCAGGAAGCAACATAATCAGGGTTTTGGTGCATGACATAACTTCCAATCTTGGAAGCTCATGTGAGAGCTCGGGGGAGTGA 2967 0.428 MSESEEENPDYVPRSKPAAEEGGCTMDIDLDLETSWPLDHMAFGSNPMSPFLFSTSSDQPYSPLWAFSDGEDPKLPASAFSDCHKIFSCDSNSMAEKPVENDDNKKLLPPLVPMPPVEILDGYCVIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDGSLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAKHYNVRGTLALPVFEPSMQSCVGVLELIMTSQKINYAPEVDKICKALETVNLRSSEILDHPYTQICNEGRLNALSEILEILTVVCETHNLPLAQTWIPCKHRSVLAQGGGVKKSCSSFDGSCMGKVCMSTTDIAFYIIDAHLWGFREACVEHHLQQSQGVAGRAFLSHSMCFCSNITQFCKTDYPLVHYALMFGLKSCFAICLRSSHTGNDDYVLEFFLPPRVTDSHEQKTLLGSIWATMKQHFQSLKIASGVELEDGSIEIIEATIERVHTRLESIPIAPSIKSPPRPDTSPNMGEEVPQDPSEQQILMYCNEINNGGSLGKNAAGNIDCMPSLETKNIKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSKSPIPIAVGSFPEPSTPNKFSQPASLSIKPPELQMKENELNASKALETNRQAGMEDQLLGGSPHLEKVTNDKGGYTQEVGKESKRTRTGSGSSEDSTNPTSHGSCHDSPPNESSPVKDIFITSNNDQSAGLKRSPESTLQPTSNMPNRPTAYPMPDFVATELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDIVPEACGINLPGPDLSPKQSMGTPNKVVTPFAAKKEMKTVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITSNLGSSCESSGE 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00959 988 MobiDBLite consensus disorder prediction 715 814 - -
Pumo3g00959 988 MobiDBLite consensus disorder prediction 750 809 - -
Pumo3g00959 988 SMART PB1_new 893 975 IPR000270 GO:0005515
Pumo3g00959 988 PANTHER PROTEIN NLP8 57 987 IPR045012 GO:0003700
Pumo3g00959 988 MobiDBLite consensus disorder prediction 674 688 - -
Pumo3g00959 988 ProSiteProfiles PB1 domain profile. 893 975 IPR000270 GO:0005515
Pumo3g00959 988 SUPERFAMILY CAD & PB1 domains 891 978 - -
Pumo3g00959 988 MobiDBLite consensus disorder prediction 510 533 - -
Pumo3g00959 988 Gene3D - 890 974 - -
Pumo3g00959 988 MobiDBLite consensus disorder prediction 1 24 - -
Pumo3g00959 988 Pfam RWP-RK domain 585 633 IPR003035 -
Pumo3g00959 988 MobiDBLite consensus disorder prediction 673 693 - -
Pumo3g00959 988 FunFam RWP-RK domain-containing protein 890 974 - -
Pumo3g00959 988 ProSiteProfiles RWP-RK domain profile. 572 653 IPR003035 -
Pumo3g00959 988 CDD PB1_NLP 894 974 IPR034891 -
Pumo3g00959 988 Pfam PB1 domain 893 974 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00959 Pumo-Chr3 14793560 14798474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00959 260 988 NLP Transcription Factor Family AT4G24020 53.485 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pumo3g00959 PB1 2.9e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00959 - - gmx:100786118 1843.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02569 6 60135379 60139948 Pumo3g00959 3 14793560 14798474 PCT