Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00950 ATGCAAGCTCCAACCACACTCACCGGATTGCTCCATCGCGTCGCCGGAATATTCCCCTCCCGCCGCGCCGTCTCCGTCTCCGGCCAATTCGACCTCACGCACTCCCGCCTCCACCACCTCGTCGACCGCGCCGCCTCGCGCCTCCTCTCCGCCGGCATCAAACCCGGCGATGTCATCGCCCTCACCTTCCCCAACACCGTCGAGTTTATAATAACGTTCCTGGCCGTTATTCGAGCGCGAGCCACGGCGGCGCCATTGAACGCGGCTTACACCGCGGAAGAGTTCGAGTTTTATTTATCCGACTCAGATTCAAAGCTGTTACTAACGTCTAAAGAAGGAAACCAGCCGGCTCAAGCCGCGGCTTCCAAGCTGAAAATACCGACATCAACGGCTTGGCTAGCGGACGGCCAAGCCGAAGAGCTGAGTCTCTCTTTGAGTTCCACCGAGTCAGTTAAGGACTCGGTTTCCGAACTTGCCAACGACGCGTCCGACGTGGCACTGTTCCTTCACACTTCCGGCACCACGAGCCGCCCCAAGGGCGTGCCGTTGACGCAGCACAATTTGGCCTCTTCGGTGGAGAACATCAAGTCCGTGTACAGACTCACTGAGTCTGACTCGACCGTCATCGTTCTCCCGTTGTTCCACGTGCACGGCTTGCTCGCGGCGTTGCTGAGCTCGCTCGCCGCCGGCGCATCCGTGGCGCTCCCGGCGGCGGGGAGGTTCTCCGCCACCACGTTTTGGAGCGACATGGTAAAGTACAACGCCACGTGGTACACCGCGGTTCCCACCGTGCACCAAATCATACTGGAGCGTCACTTAAAGAACGCGGAACCGGTTTACCCGAAGCTCCGGTTTATTCGGAGCTGTAGCGCGTCGCTTGCACCGGCTATATTGGACCGGTTGGAGGGGGCGTTCGGTGCCCCGGTTTTGGAGGCGTACGCTATGACGGAAGCCTCGCATTTGATGTCGTCGAATCCGTTACCCGAAAATGGGCCCCACCGGGCCGGGTCGGTTGGAAAGCCCGTGGGCCAAGAAATGGTAATATTAAATGAGAAAGGTGAGATTCAAAAGGCTGAGGTGAAAGGTGAGGTTTGTATTAGAGGACCCAATGTGACTAAAGGGTATAAAAATAACCCTGATGCGAATATCTCTGCGTTTCAATTCGGGTGGTTCCACACCGGTGATATCGGGTTTTTTGATTCGGACGGGTATTTGCACCTCGTGGGTCGCATCAAGGAGCTTATTAACCGTGGAGGGGAGAAAATATCACCAATAGAGGTGGATGCTGTCCTTCTATCTCATCCAGACATTGCTCAGGCAGTTGCATTCGGAGTACCAGATGACAAATATGGAGAAGAGATAAATTGTGCAATCATCCCAAAAGAAGGATCAAACATTGATGAGGCAGAGGTGCTGAGATTTAGCAAGAAGAACCTTGCAACCTTCAAAGTCCCTAAAAAGGTCTTCATCACTGATTCTTTGCCCAAGACTGCCACTGGCAAGATTCTAAGGCGTCTTGTAGCAGAACACTTCGTTTCTCGAACTTGA 1548 0.5465 MQAPTTLTGLLHRVAGIFPSRRAVSVSGQFDLTHSRLHHLVDRAASRLLSAGIKPGDVIALTFPNTVEFIITFLAVIRARATAAPLNAAYTAEEFEFYLSDSDSKLLLTSKEGNQPAQAAASKLKIPTSTAWLADGQAEELSLSLSSTESVKDSVSELANDASDVALFLHTSGTTSRPKGVPLTQHNLASSVENIKSVYRLTESDSTVIVLPLFHVHGLLAALLSSLAAGASVALPAAGRFSATTFWSDMVKYNATWYTAVPTVHQIILERHLKNAEPVYPKLRFIRSCSASLAPAILDRLEGAFGAPVLEAYAMTEASHLMSSNPLPENGPHRAGSVGKPVGQEMVILNEKGEIQKAEVKGEVCIRGPNVTKGYKNNPDANISAFQFGWFHTGDIGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPKEGSNIDEAEVLRFSKKNLATFKVPKKVFITDSLPKTATGKILRRLVAEHFVSRT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00950 515 Pfam AMP-binding enzyme C-terminal domain 426 501 IPR025110 -
Pumo3g00950 515 PANTHER ACYL-COA SYNTHETASE 17 512 - -
Pumo3g00950 515 Pfam AMP-binding enzyme 15 417 IPR000873 -
Pumo3g00950 515 Gene3D - 411 513 IPR045851 -
Pumo3g00950 515 FunFam 4-coumarate--CoA ligase 2 413 514 - -
Pumo3g00950 515 CDD FACL_fum10p_like 19 509 IPR045310 GO:0016874
Pumo3g00950 515 Gene3D - 1 410 IPR042099 -
Pumo3g00950 515 SUPERFAMILY Acetyl-CoA synthetase-like 5 512 - -
Pumo3g00950 515 FunFam Peroxisomal-coenzyme A synthetase 6 410 - -
Pumo3g00950 515 ProSitePatterns Putative AMP-binding domain signature. 168 179 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00950 Pumo-Chr3 14592150 14595657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00950 5 514 Monolignol Biosynthesis Gene Families AT4G05160 31.191 1.05e-63 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00950 K22133 - gmx:100783685 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00950 3 14592150 14595657 Pumo3g00950 3 14592150 14595657 ECH