Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00930 ATGGGTAAAGCACCTTGTTGTGAGAAACATGGAGTCAAAAGGGGAGCTTGGACTCCTGAAGAAGACCAAGCCTTAGTTGATTACATCAACAAGCATGGTCATGGAAGTTGGCGTACACTACCCAAACATGCAGGTCTCCTACGATGTGGAAAAAGTTGTCGGCTTCGGTGGATAAACTATCTTCGCCCTGGCATCAAGCGTGGCCCATTTACTAGTGAAGAAGAAAGTACAATTGTCCAACTTCATGGCATGCTTGGCAACAGGTGGGCTTCTATAGCATCCCAACTACCAGGAAGAACAGACAATGAGATTAAGAACTATTGGAACACCCATCTAAAGAAGCGTCTCCTTCGATCATGTCAATCCCTAAGAGCAAAACAGCCATGTATAATTCCTGATCGACCGATTGTTAAGTCCGAATCTCCTTCAACGCGGCACATGGTACAATGGGAAAGTGTGAGAGTTGAGGCAGAGGCAAGGTTGTCAATGGAATCCTCAATGCTCAATTCATTGCCAACGAGTAAAACAACATGCCCTGATCCCTTTCTTCAAGTATGGCATTCAGAGGTTGGAAAGTCATTTCGAATGATCAAGGGAAAGGAAGGAGTAGTGTGTCAAAGTTCTGTCTCTCAACCTTCATCCTCATCAAAATTGGAGTCTTGTTCAGATGTGTCATTGCAGGTGAAGAACACTGGAACTAGTAGTTGCAATCCAAAGCTTGAGGATGTGAACATGATTCATGAACAAACAAATAGCTACAAACCAAAGCTTGATGATGACACAGCTGGGTCTGCCTCAGGCAATTATGAATTTCTTGATACTTCTGATTCTGCACTAAAGCACCTTCTACATATGCCTGAAAGTGATATAGGATACTTGGGACAGAATGATCATTTCCAAAATCTCCTTGATGGTACATGTGACTAA 927 0.4315 MGKAPCCEKHGVKRGAWTPEEDQALVDYINKHGHGSWRTLPKHAGLLRCGKSCRLRWINYLRPGIKRGPFTSEEESTIVQLHGMLGNRWASIASQLPGRTDNEIKNYWNTHLKKRLLRSCQSLRAKQPCIIPDRPIVKSESPSTRHMVQWESVRVEAEARLSMESSMLNSLPTSKTTCPDPFLQVWHSEVGKSFRMIKGKEGVVCQSSVSQPSSSSKLESCSDVSLQVKNTGTSSCNPKLEDVNMIHEQTNSYKPKLDDDTAGSASGNYEFLDTSDSALKHLLHMPESDIGYLGQNDHFQNLLDGTCD 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00930 308 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo3g00930 308 CDD SANT 69 112 IPR001005 -
Pumo3g00930 308 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo3g00930 308 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo3g00930 308 CDD SANT 16 61 IPR001005 -
Pumo3g00930 308 FunFam Myb transcription factor 11 67 - -
Pumo3g00930 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo3g00930 308 Gene3D - 14 66 - -
Pumo3g00930 308 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo3g00930 308 Gene3D - 69 116 - -
Pumo3g00930 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo3g00930 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 248 - -
Pumo3g00930 308 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo3g00930 308 SMART sant 13 63 IPR001005 -
Pumo3g00930 308 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00930 Pumo-Chr3 14376494 14378691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00930 1 296 MYB Transcription Factor Family AT3G61250 50.165 1.54e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo3g00930 Myb_DNA-binding 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00930 K09422 - gmx:100782075 555.058