Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00928 ATGGGGTGCCAGCCATCGGAAAAGGGAAAACCAAAACATAAGAAGGGGTTATGGTCACCAGAAGAAGACAATAAGCTCAGAAACTACATCCTTAAACATGGACATGGCTGTTGGAGTTCTGTCCCCATTAAGGCAGCTCAAGCTCAGATACAATGGACTCTTCACATTCTCTCCAAAAACTTGCAACTCAAGGTCAACAGAATTGTAGCTTCACCAAAGAGGCTTGTCAAAGCTCCTTACCAAAGCTGTTATTTGCTGAGTGGCTTTCATCTGGATCATGTAAACTCTGCAAATTCAGTTGACTCTTTGGGTTTGAGGAATGGATTTGATCAAAATTCAACTTTTCAAGAAGCTGCAATTCATGATATGTCAGAGGTACCCTTTGATGGAGAGTATCATAGATGTCTGGCTAACATTTCAGTTTCAGCCCCTGAAATGTTCAATTCACAGCTAAAGTATACAAATCAAATGGTGGAAAATGGTTTCATTCATTGTATGCCTGGGGTTGACTTAAGTAGCAATTTCAGCATGAGCAATGATGCAATAATGTACATATGA 558 0.4014 MGCQPSEKGKPKHKKGLWSPEEDNKLRNYILKHGHGCWSSVPIKAAQAQIQWTLHILSKNLQLKVNRIVASPKRLVKAPYQSCYLLSGFHLDHVNSANSVDSLGLRNGFDQNSTFQEAAIHDMSEVPFDGEYHRCLANISVSAPEMFNSQLKYTNQMVENGFIHCMPGVDLSSNFSMSNDAIMYI 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00928 185 Pfam Myb-like DNA-binding domain 15 41 IPR001005 -
Pumo3g00928 185 CDD SANT 18 41 IPR001005 -
Pumo3g00928 185 ProSiteProfiles Myb-like domain profile. 10 41 IPR001005 -
Pumo3g00928 185 Gene3D - 14 74 - -
Pumo3g00928 185 SUPERFAMILY Homeodomain-like 10 43 IPR009057 -
Pumo3g00928 185 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 44 IPR017930 -
Pumo3g00928 185 PANTHER MYB DOMAIN PROTEIN 55 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00928 Pumo-Chr3 14367199 14370087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00928 8 46 MYB Transcription Factor Family AT3G48920 64.103 6.24e-14 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo3g00928 Myb_DNA-binding 1.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00928 K09422 - gmx:778167 171.4