Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00915 ATGGCTCCGCCGCTGGAACACAACGGCGATTCCACGAGTGGTGAGTCTCAGAGATCCATTCCGACGCCGTTTCTCACCAAGACCTACCAGCTCGTCGACGATCAAACCATCGACGATGTGATTTCGTGGAACGATTCTGGATCATCCTTCATCGTCTGGAACACCACCGTTTTCGCCAAGGATTTGCTTCCTAAATATTTCAAGCACAACAACTTCTCCAGCTTTGTTCGCCAACTCAACACTTATGGATTCAGAAAAGTTGTACCTGACCGCTGGGAATTCTCGAACGAGTATTTCCGAAGAGGCGAGAAACGGCTTCTCTGCGAAATCCAGCGAAGGAAGATCCTCTCGGCATCGCCGCCGGCAGGAGCAACTGCGACCGTGGCGGTTCCGTCGCCGCTGCCGATATCTGCGATTCCGACGGCGAAGCCGATCGTGTCGCCGTCGAACTCAGCGGAGGAGCAGGTGATTTCGTCGAACTCGTCGCCGGCGGAGCTGTTGGACGAGAACGAGCGGCTGAGAAAGGAGAACATTCTGCTGACGAAGGAATTGGAGGAGATGAGATCGCTCTGCAACAAGATATTCAATCTCATGTCGAATTACGCAACCGCGCAAGCGGACGGTGGTTCCACGGCGGCGAAGATGCTTAGTTTGATGCCGGCGAAGCGTTTCTCCGGCGAGGATGCGGTGCAGGAGATGAATCCGAAGCTGTTTGGGGTGGCGATTGGAACGAAGCGAGCGAGAGAGGAATGTACGAGGAGCGGAGTATGA 771 0.5473 MAPPLEHNGDSTSGESQRSIPTPFLTKTYQLVDDQTIDDVISWNDSGSSFIVWNTTVFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKILSASPPAGATATVAVPSPLPISAIPTAKPIVSPSNSAEEQVISSNSSPAELLDENERLRKENILLTKELEEMRSLCNKIFNLMSNYATAQADGGSTAAKMLSLMPAKRFSGEDAVQEMNPKLFGVAIGTKRAREECTRSGV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00915 256 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 230 IPR027725 -
Pumo3g00915 256 MobiDBLite consensus disorder prediction 1 20 - -
Pumo3g00915 256 Coils Coil 170 190 - -
Pumo3g00915 256 FunFam Heat stress transcription factor B-4 16 114 - -
Pumo3g00915 256 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g00915 256 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g00915 256 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g00915 256 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g00915 256 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g00915 256 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g00915 256 SUPERFAMILY "Winged helix" DNA-binding domain 21 113 IPR036390 -
Pumo3g00915 256 Gene3D - 16 114 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00915 Pumo-Chr3 14207983 14209334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00915 2 250 HSF AT5G62020 54.317 4.07e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo3g00915 HSF_DNA-bind 1.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00915 K09419 - gmx:100780987 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00915 3 14207983 14209334 Pumo3g00915 3 14207983 14209334 ECH
Pumo6g02616 6 62391628 62393289 Pumo3g00915 3 14207983 14209334 PCT