Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00907 ATGGATGGGGATCGAAATGAGTTGGGTACTGTGCATGAAGGGAATGTTAATATTGGACCGCAGACATCGAATAACTTGGACTTGAATGTGGAGCAGAACTGTTGCAGCCCAAATGTTTCTCATGCTAATGACATTCAATCCTTTCCTTCTTCGGCAAATGTACTCAGCGCTGATACTGTGTTGGGAATTGGTACGGAATTTGAGTCTGATGATCATGCATACAGATTCTATAACAAGTATGCCAGATTGGTGGGTTTCAATGTTAGAAAAGATTGGATAAATAGGAGTAAGGTGCATGGTCTGGTGGTGTCTAGGAAGTTTACCTGCTCCAAAGAGGGATACCGCAGGAAAGACAAAAGAGATGTTAATGTGAAGAAACATCGCAAGGAAACAAGAACTGGCTGCTTGGCACATATGATTGTCACTCGGCGACCAGATGGTAAATACCAGGTCACCCATTTTGAAGCACAACATAATCATGACAATATAAACCCTAACAACGTTAACATGTTAAACTTGCAAAATGAATTTGGTGTTGCTCAAGATGTGGAAGCTGACTCGAACAATAGTTTGGGACCTAAATCAAAGTCAGCATTAGATATGTTGAATAAAAAAATAAGTGCCCGTGAATGTCGTGATCTACTTTCAATGAATTATGACAATTACCTTCATTCTGCGAGGGAAAGAGATATGAGGGAAGGAGAAGCAGGGCGTTTGCTTGGTTACTTTCAAAGGCAGCACTTTGAAAATCCAACATTTTTTTATGCCATACAGCTTGATGTTGATGACAAGGTTAGCAATCTTTTTTGGGCTGATGACAATATGGTGGTGGATTATGACCATTTTGGTGATGTCATTTGTTTGGATACAACTTGTAGAACAAACGAAGATCTTCGGCCATTTGTACAGTTTTTAGGTGTTAACCATCACAAACAAGTGTTAATCTTTGCTGCTGCTTTTCTGTATGATGATTCCATTGAATCATTTAATTGGCTATTTCAAACTTTCATCAATGCAATGTCAGGGAAAAAGCCAAAGGTCATTCTCACAGAACAAGAAGCTGTAATTATTGAAGCAGTCAATACGGTTTTACCTGACACAAACCATTGTACATGTGTATGGCAGTTGTATGAGAACACTTTGAAACACCTCAGCCATGTTGTCAAGGATGCTGATTCTTTTGCAAACGACCTACAGAGCAGTATTTACGACCCCAAGGATGAGGAAGAATTTACTCATGCTTGGGAGGCTATGCTGGAGAAGTATAATCTGCAGCAAAATGAATGGCTGAGATGGATGTATAGAGAAAGAGAGAAATGGGCTGTTGTCTTTGGTCAGAATACATTTTTTGTAGACATCAAAGGCTTTCATTTAGCTGAGGTTTTGTCTCATAAGTTTAGAAGTTATCTAAATCCTGACCTTGATGTAGTTCAATTTTTTAAGCATTTTGAAAGGGTAGTAGATGAGCAGCGTTATAAAGAAATAGAAGCTAGTGATGAAATGAGCAGGTGTTTGCCAAGGCTAATGGGTAATGTGGTGTTGTTGAAGCATGCAAGTGATATTTATACTCCAAGAGCATTTGAAGTACTTCAGCGAGCATATGAGAAGTCTTTAAATGTTCTTGTTAATCAACACAGTAGAAATGGATCATTGTTTGAGTACAAAGCAAATACTTTTGGGCATACTAGACAATACAGTGTCACCTTCAATTCTTCTGATGACACAGTTGTCTGCAGTTGTATGAAGTTTGAGCGTGTTGGATTTCTGTGTAGCCATGCACTTAAAGTTCTTGATCATAGAAACATAAAAGTAGTTCCTTCTCAGTACATCTTGGATAGATGGACAGCAGATGCAAAGTTGGGAAATCTTAGGGAGATTAGGCAAAGTAAAATGCAAGATAATCCTAAAAAGGTTGTTGCAAGTTGTTACAGAGATTTGTGCCACAGACTGCTCAAGTTGTCCGCAAGAGCCTCCGAATCTATGGAGGCTTATCAATTTGCTGCGAGGCAACTTGATGAAGTGATGGTAGGAGTGGAGAAAATCGTGACATTGAAAGTTGAGGAAGGTCAAGTTATCACCTCAAGTAATATTGATGCAAATGCTTCAGAAAGTGAGCCTGCAGAGATCTTTCTGAATGGACATGCAATTGAGGATCAGGATGAAAGTAACAGAGCAAATAGTGGAAAAGACAGGAGAACTACATCAGATAGGGGGCATCTAACAACCATGACTTGTAATGGAGCTGATTCTGATAGGATTTTGAATGTGGAAGTATCTCCACCAAATACCGTTGTCTGCATTTCAAGCCCCTCATCTGCATATGTTTCATCTCAGTCTGCAGCACCAAATCCCATTCTGCAGGGTTTGTACGGTTTTGAAGCCAATCAAGTGGTTCACTGCATGTATGAACAGACTAATCTTGTGCTGGACCATCAATCTAATTCTAACATGTTACAACCGTCAAACATCTTTTCTAACCAACAGGATTCTCCCGGTCAATCTCAACTATTGCAGGAGCCTATAATCCAGAGCACATACCATGAGTCCATCCCAAGCAATAATCAGATGCGACAGGGGATGGATCTCGACATCCAAAATCCACATTCATCTTCATTCTTGCTGTATGACCATAGATACAGAAGTTCTGAGTCTGCATGA 2658 0.3977 MDGDRNELGTVHEGNVNIGPQTSNNLDLNVEQNCCSPNVSHANDIQSFPSSANVLSADTVLGIGTEFESDDHAYRFYNKYARLVGFNVRKDWINRSKVHGLVVSRKFTCSKEGYRRKDKRDVNVKKHRKETRTGCLAHMIVTRRPDGKYQVTHFEAQHNHDNINPNNVNMLNLQNEFGVAQDVEADSNNSLGPKSKSALDMLNKKISARECRDLLSMNYDNYLHSARERDMREGEAGRLLGYFQRQHFENPTFFYAIQLDVDDKVSNLFWADDNMVVDYDHFGDVICLDTTCRTNEDLRPFVQFLGVNHHKQVLIFAAAFLYDDSIESFNWLFQTFINAMSGKKPKVILTEQEAVIIEAVNTVLPDTNHCTCVWQLYENTLKHLSHVVKDADSFANDLQSSIYDPKDEEEFTHAWEAMLEKYNLQQNEWLRWMYREREKWAVVFGQNTFFVDIKGFHLAEVLSHKFRSYLNPDLDVVQFFKHFERVVDEQRYKEIEASDEMSRCLPRLMGNVVLLKHASDIYTPRAFEVLQRAYEKSLNVLVNQHSRNGSLFEYKANTFGHTRQYSVTFNSSDDTVVCSCMKFERVGFLCSHALKVLDHRNIKVVPSQYILDRWTADAKLGNLREIRQSKMQDNPKKVVASCYRDLCHRLLKLSARASESMEAYQFAARQLDEVMVGVEKIVTLKVEEGQVITSSNIDANASESEPAEIFLNGHAIEDQDESNRANSGKDRRTTSDRGHLTTMTCNGADSDRILNVEVSPPNTVVCISSPSSAYVSSQSAAPNPILQGLYGFEANQVVHCMYEQTNLVLDHQSNSNMLQPSNIFSNQQDSPGQSQLLQEPIIQSTYHESIPSNNQMRQGMDLDIQNPHSSSFLLYDHRYRSSESA 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00907 885 ProSiteProfiles Zinc finger SWIM-type profile. 565 601 IPR007527 GO:0008270
Pumo3g00907 885 Pfam MULE transposase domain 285 379 IPR018289 -
Pumo3g00907 885 MobiDBLite consensus disorder prediction 1 20 - -
Pumo3g00907 885 MobiDBLite consensus disorder prediction 714 737 - -
Pumo3g00907 885 SMART 26again6 576 603 IPR006564 GO:0008270
Pumo3g00907 885 MobiDBLite consensus disorder prediction 713 740 - -
Pumo3g00907 885 Pfam SWIM zinc finger 578 601 IPR007527 GO:0008270
Pumo3g00907 885 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 57 679 IPR031052 GO:0006355
Pumo3g00907 885 Pfam FAR1 DNA-binding domain 75 161 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00907 Pumo-Chr3 14105382 14110526 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pumo3g00907 MULE 2.4e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00907 - K17604 gmx:100809803 1555.42