Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00899 ATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCAGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTCGCTTTTATCTATATGGAAGACGAGAGAGATGCTGAGGCTGCGATTCGTGCTCTCGATCGAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGCGTGGAATGGACAAAGCATGAACGTGGCGTTAGAAGGCCTGCTGGTTCAAGAAGATCTTCAGCTAATGGGAGGCCATCGAAGACCTTGTTTGTAATTAATTTTGATACATACCATACCAGAACAAGGGATTTGGAGAGGCACTTTGAACCGTATGGAAAGATAGTCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAATATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATTTCAGTTGAATTTGCTGTTAAAGATGATGATGATAGGAGAAATGGATATAGCCCTGAGAGAGGCCGTGATCGTCAACGTGATAGAAGCCGTGACGGAAGGCGATCACCTAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTATGGCCGTGGGCCCAGTCCATATCAGAGAGAGAGGGGCAGCCCTGACTATGGCCGTGACCGTAGCCGTAGCAGAAGCCCCCCTCGGAGAGAGCGGGCTAGCCCTGCTTACGGGCGTAGAAGCCCTAGTCCATATAGAAGAGAAAGGGAGGGTTCTGACCCTGTTCGTGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCATGGCATTTCTCCTTCTCACAGTCCCGAAGGAAGAGGAAGGAAAAGCCCCCAAAATGGTCGCAGTTCTAGCCGTAGTCCTCGTGATACTGGGAAGACTAGCCCTGAAAATGGACATGGCTCCGGAAGTCCTGATGAAAAAGGGAATCCCAGCCCTTACAATGGTTATGGAGGGAGCCCCAATACTATGCCTGATCCCAGGGACAGTCCCAACTATGGTGGTCCTGAAAGTCCCATGCATGAAAGATATCGCAGGTTTGCAAACATCTACTCCCTCCGAACTAAAATATAA 1122 0.4866 MRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKHERGVRRPAGSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYQRERGSPDYGRDRSRSRSPPRRERASPAYGRRSPSPYRREREGSDPVRDSSRSPYHKERGRTDHGISPSHSPEGRGRKSPQNGRSSSRSPRDTGKTSPENGHGSGSPDEKGNPSPYNGYGGSPNTMPDPRDSPNYGGPESPMHERYRRFANIYSLRTKI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00899 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Pumo3g00899 373 MobiDBLite consensus disorder prediction 219 285 - -
Pumo3g00899 373 SUPERFAMILY RNA-binding domain, RBD 4 92 IPR035979 GO:0003676
Pumo3g00899 373 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Pumo3g00899 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Pumo3g00899 373 MobiDBLite consensus disorder prediction 168 358 - -
Pumo3g00899 373 SMART rrm1_1 96 162 IPR000504 GO:0003723
Pumo3g00899 373 SMART rrm1_1 3 70 IPR000504 GO:0003723
Pumo3g00899 373 Gene3D - 88 176 IPR012677 -
Pumo3g00899 373 Gene3D - 1 87 IPR012677 -
Pumo3g00899 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Pumo3g00899 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Pumo3g00899 373 MobiDBLite consensus disorder prediction 168 206 - -
Pumo3g00899 373 FunFam Serine/arginine-rich splicing factor RS31 87 177 - -
Pumo3g00899 373 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 96 300 - -
Pumo3g00899 373 CDD RRM1_AtRSp31_like 2 73 - -
Pumo3g00899 373 MobiDBLite consensus disorder prediction 288 317 - -
Pumo3g00899 373 SUPERFAMILY RNA-binding domain, RBD 80 172 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00899 Pumo-Chr3 13997915 14002392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00899 4 161 Eukaryotic Initiation Factors Gene Family AT4G34110 23.699 1.54e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00899 K12893 - gmx:100796509 637.876