Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00898 ATGATATCAAGTTGGTGTGCTGCTTGCAAGAATCAAAGAAGAAAATGTCCTTCAGATTGCATTTTCTCTCCTTATTTCCCTTCTAATGATCCTCATAGATATGCTACCGTTCACAAAATATTTGATGGCAGCAACGTTGGGAAAATGCTTCAGCAAATTCCACCCTATGTCCGAGCACAGGCCGCAGATAGTTTATATTATGAAGCACAATGTCGTATTCAAGATCCTATTTATGGTTGTTATGGAATTATCTCTCAACTTGTTCAACAAATCCAAAGTACAGAAACTGAGTTAGCCAAAATTCAAGCTCAAATTAGCATTCTCAAGCTCCAAAACCCACAGGTTGAATATGAACCAAATTTCGATGTCTCGTTTGCACAGAATAGCATGGGGCAGTTTCAGTGA 405 0.3852 MISSWCAACKNQRRKCPSDCIFSPYFPSNDPHRYATVHKIFDGSNVGKMLQQIPPYVRAQAADSLYYEAQCRIQDPIYGCYGIISQLVQQIQSTETELAKIQAQISILKLQNPQVEYEPNFDVSFAQNSMGQFQ 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00898 134 Pfam Lateral organ boundaries (LOB) domain 6 102 IPR004883 -
Pumo3g00898 134 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Pumo3g00898 134 Coils Coil 84 111 - -
Pumo3g00898 134 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00898 Pumo-Chr3 13994388 13995661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00898 1 116 AS2 family AT3G26660 54.310 3.06e-45 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo3g00898 LOB 2.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00898 - - gmx:100790640 190.66