Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00896 ATGGATGGCAACCCTTTTGGAAACGTGCCACCTCCACCCATACAAGTCCCTGATAACTTTGCTATCTCTTCTTCCTCCTCGCCAACCCCAACCACGTCGTCTCCGTCTCCGACACCCTCCGGCGGCATCCGGTACCGGGGGACGCGGTGCCGGAGCGGGAAGTGGGTGTCGGAGATAAGGGAGCCACGTAAAACGAAGCGCATTTGGCTGGGGACTTACCCGACAGCGGAAATGGCTGCGGCTGCTTATGATGTCGCGGCCCTCGCGTTGAAGGGCCCCGACACGCCCCTTAACTTCCCCAATTCGATACTCTCGTACCCGATTCCTGCGTCATTGTCCGCCACCGATATCCGCGCCGCAGCCGCGGCAGCCGCGCAGGCTAGGATCGTGGGGGCCCCGCAGGAGAGTGGGGAAACGGTAAACCCTGATGATGGTGGGCAAGGGTTGTTGGAGAGGCGTGAGGAGTACATTGATGAGGATGAGTTGTTGAACATGCCGAATTTGCTTGATGACATGGCCAGGGGAATGCAGGTTAGTCCCCCTAGGATCACTTCCTTTTCTTCAGATGATTCGCCTGGGAATTCTGATGGAGATAACCTTTGGAGTTATACCCTTTGA 618 0.5744 MDGNPFGNVPPPPIQVPDNFAISSSSSPTPTTSSPSPTPSGGIRYRGTRCRSGKWVSEIREPRKTKRIWLGTYPTAEMAAAAYDVAALALKGPDTPLNFPNSILSYPIPASLSATDIRAAAAAAAQARIVGAPQESGETVNPDDGGQGLLERREEYIDEDELLNMPNLLDDMARGMQVSPPRITSFSSDDSPGNSDGDNLWSYTL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00896 205 MobiDBLite consensus disorder prediction 180 205 - -
Pumo3g00896 205 MobiDBLite consensus disorder prediction 1 47 - -
Pumo3g00896 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 176 - -
Pumo3g00896 205 MobiDBLite consensus disorder prediction 1 17 - -
Pumo3g00896 205 FunFam Ethylene-responsive transcription factor 2 44 101 - -
Pumo3g00896 205 Pfam AP2 domain 49 92 IPR001471 GO:0003700|GO:0006355
Pumo3g00896 205 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Pumo3g00896 205 SMART rav1_2 44 106 IPR001471 GO:0003700|GO:0006355
Pumo3g00896 205 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Pumo3g00896 205 MobiDBLite consensus disorder prediction 18 41 - -
Pumo3g00896 205 Gene3D AP2/ERF domain 43 102 IPR036955 GO:0003700|GO:0006355
Pumo3g00896 205 ProSiteProfiles AP2/ERF domain profile. 44 100 IPR001471 GO:0003700|GO:0006355
Pumo3g00896 205 MobiDBLite consensus disorder prediction 179 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00896 Pumo-Chr3 13956328 13959387 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00896 45 203 AP2-EREBP Transcription Factor Family AT5G52020 57.396 3.00e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g00896 AP2 1.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00896 - - gmx:100776717 347.821