Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00895 ATGTTTTCCATCAATCATTTCTCAGACCCAGACGCGACCTCGCCGGTGTCGGAAGGTTGTTGTTCCCGACCGGCGCTGTCGGACGAGGAGTATTTTCTGGCGGCGAGCCACCCCAAGAAACGCGCCGGGAGGAAGAAGTTCCGGGAGACGCGCCATCCGGTGTACCGCGGCGTGAGGAGAAGGGACTCCGGCAAGTGGGTCTGCGAGGTGCGTGAGCCCAACAAGAAGTCCAGGATTTGGCTCGGGACCTTCCCCACGGCGGAGATGGCGGCGCGTGCGCACGACGTGGCGGCCATCGCGCTGAGAGGAAGGTCCGCCTGCCTCAATTTCGCCGACTCCACGTGGCGGCTCCCGGTGCCGGCCACGGCGGAGGCCAGGGACATTCAGAAGGCGGCGGCGGAGGCCGCGGAGGCGTTTCGGCCGGGGAAGGAAGATGATGCGGTGGCGGAGACGGCGGCGGTGGCGGCGACGGAGCGTGAAGAAGAAGAAGAGATGGTGCCGGAATATCTGAGGAACATGGTGCTCATGTCGCCGACGCATTGCTTCGGGAGTGATGAGTATGGAAGTGCTGACGTGGAGTTTGACGATGCTGAAGTTTCGTTGTGGAGTTACTCGATTTAA 621 0.6264 MFSINHFSDPDATSPVSEGCCSRPALSDEEYFLAASHPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSTWRLPVPATAEARDIQKAAAEAAEAFRPGKEDDAVAETAAVAATEREEEEEMVPEYLRNMVLMSPTHCFGSDEYGSADVEFDDAEVSLWSYSI 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00895 206 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Pumo3g00895 206 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Pumo3g00895 206 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Pumo3g00895 206 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Pumo3g00895 206 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Pumo3g00895 206 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Pumo3g00895 206 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Pumo3g00895 206 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Pumo3g00895 206 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 204 IPR045277 GO:0003700
Pumo3g00895 206 FunFam Ethylene-responsive transcription factor 2 53 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00895 Pumo-Chr3 13937737 13939047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00895 2 204 AP2-EREBP Transcription Factor Family AT5G51990 51.316 1.60e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g00895 AP2 1.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00895 - - gmx:100101894 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00895 3 13937737 13939047 Pumo3g00895 3 13937737 13939047 ECH