Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00890 ATGGCTGTTGCTAAGAGCAACAGTAGCAGTGAGCATTCAACTTCATATAATTGTTATAAAGTAGCAAGCTTGACCGAAACCATATTAGACACGAACCAAATCTCTAATTTGAAAGATCGATATGTTCTTGGAGAGCAGTTGGGTTGGGGGCAATTTGGTGTCATAAGAGCATGCTCTGACAAGCTGACCGGAGAGATAGGTTGGTTACTTCATCAGCAGAGTGTTAAACTTGAGATTGAGATAATGGCTAGGTTATTTGGGCACCTAAATGTTGTAGATCTCAAGGCAGTTTATGAAGAGGAGGATTTTGTTCATTTGGTGATGGAGCTTTGTGCCGGAGGAGAGTTGTTTCATCTGTTAGAGAAGCATGGACGGTTTTCTGAATTTGAAGCCAGGGTTCTCTTTAGGCAACTGATGCAAATGGTTTTGTATTATCATGAAAATGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTGGCAACTAGAGCTTCCTCATCTCCAATTAAATTGGCAGACTTTGGGCTTGCAACCTACATCAAGCCTGCAGGACAGAGTTTGCATGGGGGTTATTCTTTACATTTTACTGAGTGGGATGCCTCCATTTTGGGGAAAGACAGAGTCACGGACTCACGGATATTTGAAGTTGTTAAGACTGCTAACTTGAGGTTTCCACCCGAGTCTTGGGATTGCATTTCTGAATTAGCTAAGGATTTGATTAGGGGAATGCTCTGCAGAGAATCTTCTTGGAGGCTCACTACCAAGGAGGTTTTAGATCATCACTGGATGGAAAGCAATCAAACAAATCCTGAACAACTAAGTGAACATAAAATTAGAAGTTGTGGAGAGTGGGATGTTAGTAGCAACTCATTCTCTACCTCGTTTATGTCCAGGGATAAGGACATCAGCTTTGGCGCTCCATCGCCTACATTCACATTCAAATCATCATTTTCTTCCTTTTTTGAGGAACCAGTGACACCTTGTTCTGTTTCTGGTGGATTTTCATTCAGAGCTCAGGTGGTTCCACTGATTTGGAATTTTCTTCTACTATTCCCTCAATGCCTAGCTTTGCATTTTTCAGCTCCAGTTCTGTTGTTGAGCAAAGGGTTTGTATATCAGAATTCCTAA 1134 0.4153 MAVAKSNSSSEHSTSYNCYKVASLTETILDTNQISNLKDRYVLGEQLGWGQFGVIRACSDKLTGEIGWLLHQQSVKLEIEIMARLFGHLNVVDLKAVYEEEDFVHLVMELCAGGELFHLLEKHGRFSEFEARVLFRQLMQMVLYYHENGVVHRDLKPENILLATRASSSPIKLADFGLATYIKPAGQSLHGGYSLHFTEWDASILGKDRVTDSRIFEVVKTANLRFPPESWDCISELAKDLIRGMLCRESSWRLTTKEVLDHHWMESNQTNPEQLSEHKIRSCGEWDVSSNSFSTSFMSRDKDISFGAPSPTFTFKSSFSSFFEEPVTPCSVSGGFSFRAQVVPLIWNFLLLFPQCLALHFSAPVLLLSKGFVYQNS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00890 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Pumo3g00890 377 Gene3D Transferase(Phosphotransferase) domain 1 198 295 - -
Pumo3g00890 377 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 294 - -
Pumo3g00890 377 SUPERFAMILY Protein kinase-like (PK-like) 33 313 IPR011009 -
Pumo3g00890 377 ProSiteProfiles Protein kinase domain profile. 41 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00890 377 Pfam Protein kinase domain 42 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00890 377 SMART serkin_6 41 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00890 377 Gene3D Transferase(Phosphotransferase) domain 1 31 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00890 Pumo-Chr3 13815030 13820926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00890 28 272 EF-hand Containing Proteins AT3G57530 34.409 1.67e-47 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo3g00890 Pkinase 2.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00890 - - pvu:PHAVU_004G122500g 448.358