Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00881 ATGGTGAGGGGAAAGGTTCAAATGAAGAAGATTGAGAATGCAACAAGCCGTCAAGTGACGTTTTCAAAGCGTCGAAGTGGTCTTCTAAAGAAAGCGTACGAGTTATCCGTTCTTTGTGATGCACAAGTAGCTGCGATAATATTCTCACAGAACGGAAGGCTCTATGAGTTCTCAAGTTCTGACATGACACAGATTTTGGAACGATACCGTGAATATACCAAAGATGTTCCTGCCAATAAGTTTGGAGACGATTATATCCAGCAACTGAAGTTGGACTCCGCAAGCATGGCAAAGAAGATTGAGCTTCTTGAACATTCTAAAAGGAAGCTGATGGGACAAAGCGTAAGCTCTTGTTCTTATGATGAACTCAAAGGAATTGAGGAGCAGCTACAGAGAAGTTTGCAAAGAGTCAGGCAGAGAAAAACTCAACTATATACGGAGCAGATTGATCAACTACGATCCCAGGAGAGTAACTTGCTCAAAGAAAATGCTAAATTAAGTGCAATGTGGCAGAGGGCGGAAAAATCATCCCAGCAGCAATGGCCTAGACACACACAAGCAGAAGCAGCAAGTAGCCAGAGTTTAGATGTGGATACAGAATTATTTATTGGACTTCCAAAGCAGCATTGCTGA 633 0.4234 MVRGKVQMKKIENATSRQVTFSKRRSGLLKKAYELSVLCDAQVAAIIFSQNGRLYEFSSSDMTQILERYREYTKDVPANKFGDDYIQQLKLDSASMAKKIELLEHSKRKLMGQSVSSCSYDELKGIEEQLQRSLQRVRQRKTQLYTEQIDQLRSQESNLLKENAKLSAMWQRAEKSSQQQWPRHTQAEAASSQSLDVDTELFIGLPKQHC 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00881 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pumo3g00881 210 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pumo3g00881 210 Coils Coil 149 169 - -
Pumo3g00881 210 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo3g00881 210 Coils Coil 120 147 - -
Pumo3g00881 210 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Pumo3g00881 210 MobiDBLite consensus disorder prediction 173 192 - -
Pumo3g00881 210 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Pumo3g00881 210 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Pumo3g00881 210 Pfam K-box region 87 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo3g00881 210 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo3g00881 210 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pumo3g00881 210 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo3g00881 210 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Pumo3g00881 210 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo3g00881 210 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00881 Pumo-Chr3 13729180 13741406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00881 1 206 MADS-box Gene Family AT4G22950 49.275 1.11e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo3g00881 K-box 4.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00881 - - gmx:100800580 370.933